Strain identifier

BacDive ID: 159559

Type strain: No

Species: Lactobacillus equicursoris

Strain Designation: WCA-470BD-2E

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

NCBI tax ID(s): 420645 (species)

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General

@ref: 66385

BacDive-ID: 159559

DSM-Number: 104994

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Lactobacillus equicursoris WCA-470BD-2E is a mesophilic bacterium that was isolated from pig, WT, 12 months old, feces.

NCBI tax id

  • NCBI tax id: 420645
  • Matching level: species

strain history

  • @ref: 66385
  • history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

doi: 10.13145/bacdive159559.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus equicursoris
  • full scientific name: Lactobacillus equicursoris Morita et al. 2010

@ref: 66385

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus equicursoris

full scientific name: Lactobacillus equicursoris Morita et al. 2010

strain designation: WCA-470BD-2E

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no91
12543893.041positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66385PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
66385COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 66385
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: anaerobe
  • confidence: 98

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 98.7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan-energy source
6838017632nitrate-reduction
6838029985L-glutamate-degradation
6838016634raffinose-fermentation
6838016024D-mannose+fermentation
6838029016arginine+hydrolysis
6838016199urea-hydrolysis

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380tryptophan deaminase-4.1.99.1
68380alkaline phosphatase-3.1.3.1
68380glutamate decarboxylase-4.1.1.15
68380alpha-fucosidase-3.2.1.51
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380alpha-galactosidase-3.2.1.22
68380histidine arylamidase+
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380alpha-arabinosidase-3.2.1.55
68380beta-Galactosidase 6-phosphate-
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66385-+-+/--++---+------+++++-++++-+/-

Isolation, sampling and environmental information

isolation

  • @ref: 66385
  • sample type: pig, WT, 12 months old, feces
  • geographic location: Kranzberg (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_503.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_326;97_363;98_411;99_503&stattab=map
  • Last taxonomy: Lactobacillus
  • 16S sequence: MN537476
  • Sequence Identity:
  • Total samples: 43069
  • soil counts: 1469
  • aquatic counts: 2848
  • animal counts: 38003
  • plant counts: 749

Safety information

risk assessment

  • @ref: 66385
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66385
  • description: Lactobacillus equicursoris strain DSM 104994 16S ribosomal RNA gene, partial sequence
  • accession: MN537476
  • length: 1396
  • database: nuccore
  • NCBI tax ID: 420645

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus equicursoris WCA-470BD-2EGCA_009695965contigncbi420645
66792Lactobacillus equicursoris strain WCA-470BD-2E420645.4wgspatric420645

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes93.041no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no74.73no
125438spore-formingspore-formingAbility to form endo- or exosporesno88.098no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.051no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.5no
125438motile2+flagellatedAbility to perform flagellated movementno91no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.7
125439BacteriaNetmotilityAbility to perform movementno79.4
125439BacteriaNetgram_stainReaction to gram-stainingvariable66.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthanaerobe98

External links

@ref: 66385

culture collection no.: DSM 104994

straininfo link

  • @ref: 112038
  • straininfo: 397811

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66385Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104994Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104994)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
112038Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397811.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG