Strain identifier
BacDive ID: 159480
Type strain: 
Species: Desulfoluna spongiiphila
Strain Designation: DBB
Strain history: <- P. Peng; Wageningen University, Wageningen, Netherlands; DBB <- P. Peng {2015}
NCBI tax ID(s): 419481 (species)
version 8.1 (current version)
General
@ref: 66303
BacDive-ID: 159480
DSM-Number: 104433
keywords: 16S sequence, Bacteria, mesophilic
description: Desulfoluna spongiiphila DBB is a mesophilic bacterium that was isolated from sea shore sand.
NCBI tax id
- NCBI tax id: 419481
- Matching level: species
strain history
- @ref: 66303
- history: <- P. Peng; Wageningen University, Wageningen, Netherlands; DBB <- P. Peng {2015}
doi: 10.13145/bacdive159480.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobacteraceae
- genus: Desulfoluna
- species: Desulfoluna spongiiphila
- full scientific name: Desulfoluna spongiiphila Ahn et al. 2009
@ref: 66303
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfoluna
species: Desulfoluna spongiiphila
full scientific name: Desulfoluna spongiiphila Ahn et al. 2009
strain designation: DBB
type strain: no
Culture and growth conditions
culture medium
- @ref: 66303
- name: MARINE DESULFOVIBRIO COMPLEX MEDIUM (DSMZ Medium 1040)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1040
- composition: Name: MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040) Composition: Sea Salt 34.9301 g/l Na-DL-lactate 2.49501 g/l Yeast extract 0.998004 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l CoCl2 x 6 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l CaCl2 x 2 H2O 0.000998004 g/l FeSO4 x 7 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l CuSO4 x 5 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
- @ref: 66303
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66303
- sample type: sea shore sand
- geographic location: l'escala
- country: Spain
- origin.country: ESP
- continent: Europe
- latitude: 42.1265
- longitude: 3.1353
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Coast |
| #Environmental | #Terrestrial | #Sandy |
taxonmaps
- @ref: 69479
- File name: preview.99_170428.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_705;96_3816;97_13850;98_63796;99_170428&stattab=map
- Last taxonomy: Desulfoluna spongiiphila subclade
- 16S sequence: MK881099
- Sequence Identity:
- Total samples: 90
- soil counts: 1
- aquatic counts: 83
- animal counts: 6
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66303 | Desulfoluna spongiiphila strain 16S_seq1 16S ribosomal RNA gene, partial sequence | MK881098 | 1551 | ena | 419481 |
| 66303 | Desulfoluna spongiiphila strain 16S_seq2 16S ribosomal RNA gene, partial sequence | MK881099 | 1552 | ena | 419481 |
External links
@ref: 66303
culture collection no.: DSM 104433
straininfo link
- @ref: 111970
- straininfo: 406561
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66303 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104433 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104433) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111970 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406561.1 |