Strain identifier

BacDive ID: 159475

Type strain: No

Species: Faecalibacterium prausnitzii

Strain Designation: APC918/95b

Strain history: <- B. Fitzgerald, University College Cork, Microbiology; APC918/95b

NCBI tax ID(s): 853 (species)

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General

@ref: 66298

BacDive-ID: 159475

DSM-Number: 107838

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Faecalibacterium prausnitzii APC918/95b is a mesophilic bacterium that was isolated from Human feces.

NCBI tax id

  • NCBI tax id: 853
  • Matching level: species

strain history

  • @ref: 66298
  • history: <- B. Fitzgerald, University College Cork, Microbiology; APC918/95b

doi: 10.13145/bacdive159475.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Faecalibacterium
  • species: Faecalibacterium prausnitzii
  • full scientific name: Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002

  • synonyms

    @refsynonym
    20215Faecalibacterium moorei
    20215Fusobacterium prausnitzii
    20215Bacteroides praussnitzii

@ref: 66298

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Oscillospiraceae

genus: Faecalibacterium

species: Faecalibacterium prausnitzii

full scientific name: Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002 emend. Fitzgerald et al. 2018

strain designation: APC918/95b

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66298YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1611.pdf
66298CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 66298
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66298---+-------------+-+/------++--
66298---+-------------+-+-----++--

Isolation, sampling and environmental information

isolation

  • @ref: 66298
  • sample type: Human feces
  • geographic location: Cork, University College Cork
  • country: Ireland
  • origin.country: IRL
  • continent: Europe
  • latitude: 51.9036
  • longitude: -8.4684

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2038.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_286;96_1126;97_1322;98_1596;99_2038&stattab=map
  • Last taxonomy: Faecalibacterium prausnitzii subclade
  • 16S sequence: CP030777
  • Sequence Identity:
  • Total samples: 17253
  • soil counts: 28
  • aquatic counts: 86
  • animal counts: 17123
  • plant counts: 16

Safety information

risk assessment

  • @ref: 66298
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66298
  • description: Faecalibacterium prausnitzii strain APC918/95b chromosome, complete genome
  • accession: CP030777
  • length: 2970937
  • database: ena
  • NCBI tax ID: 853

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Faecalibacterium prausnitzii APC918/95bGCA_003312465completencbi853
66792Faecalibacterium prausnitzii APC918/95b2836647120completeimg853

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno96.925no
gram-positiveyes82.88no
anaerobicyes99.998no
aerobicno98.751no
halophileno87.835no
spore-formingno91.656no
glucose-utilyes89.152no
motileno92.785no
glucose-fermentyes79.862no
thermophileno92.185yes

External links

@ref: 66298

culture collection no.: DSM 107838, JCM 39207

straininfo link

  • @ref: 111966
  • straininfo: 405311

literature

  • topic: Phylogeny
  • Pubmed-ID: 35416766
  • title: Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.
  • authors: Sakamoto M, Sakurai N, Tanno H, Iino T, Ohkuma M, Endo A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005379
  • year: 2022
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, *Chickens, DNA, Bacterial/genetics, Faecalibacterium, *Fatty Acids/chemistry, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66298Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107838Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107838)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111966Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405311.1