Strain identifier
BacDive ID: 159468
Type strain: 
Species: Actinopolyspora sp.
Strain Designation: H259
Strain history: <- N. Sabaou, Kouba,Alger,Algeria; H259 <- A. Meklat et al.
NCBI tax ID(s): 54063 (species)
version 9.1 (current version)
General
@ref: 66291
BacDive-ID: 159468
DSM-Number: 45956
keywords: genome sequence, Bacteria, spore-forming
description: Actinopolyspora sp. H259 is a spore-forming bacterium that was isolated from saharian soil.
NCBI tax id
- NCBI tax id: 54063
- Matching level: species
strain history
- @ref: 66291
- history: <- N. Sabaou, Kouba,Alger,Algeria; H259 <- A. Meklat et al.
doi: 10.13145/bacdive159468.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinopolyspora
- species: Actinopolyspora sp.
- full scientific name: Actinopolyspora Gochnauer et al. 1975 (Approved Lists 1980)
@ref: 66291
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinopolysporales
family: Actinopolysporaceae
genus: Actinopolyspora
species: Actinopolyspora sp.
full scientific name: Actinopolyspora sp.
strain designation: H259
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 90
multimedia
- @ref: 66291
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45956.jpg
- caption: Medium 1504 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 95
Isolation, sampling and environmental information
isolation
- @ref: 66291
- sample type: saharian soil
- geographic location: Lio
- country: Algeria
- origin.country: DZA
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinopolyspora sp. DSM 45956 | 2512148.3 | wgs | patric | 2512148 |
| 66792 | Actinopolyspora sp. DSM 45956 | 2806310508 | draft | img | 2512148 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 95 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.738 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.64 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 81.258 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.696 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.134 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90 | no |
External links
@ref: 66291
culture collection no.: DSM 45956
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66291 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45956 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45956) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |