Strain identifier

BacDive ID: 159313

Type strain: Yes

Species: Ottowia flava

Strain Designation: GY511

Strain history: <- Y. Jiang, Yunnan Animal Science and Vet. Institute, Kunming, P.R. China; GY511 <- S. Shi

NCBI tax ID(s): 2675430 (species)

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General

@ref: 66136

BacDive-ID: 159313

DSM-Number: 107425

keywords: 16S sequence, Bacteria

description: Ottowia flava GY511 is a bacterium that was isolated from Fish intestines.

NCBI tax id

  • NCBI tax id: 2675430
  • Matching level: species

strain history

  • @ref: 66136
  • history: <- Y. Jiang, Yunnan Animal Science and Vet. Institute, Kunming, P.R. China; GY511 <- S. Shi

doi: 10.13145/bacdive159313.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Ottowia
  • species: Ottowia flava
  • full scientific name: Ottowia flava Shi et al. 2020

@ref: 66136

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Ottowia

species: Ottowia flava

full scientific name: Ottowia flava Shi et al. 2019

strain designation: GY511

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66136TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
66136TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

  • @ref: 66136
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
66136------+---------+--++

Isolation, sampling and environmental information

isolation

  • @ref: 66136
  • sample type: Fish intestines
  • geographic location: Guangxi Maowei Sea (21° 51' 40.3'' N, 108° 34' 9.1'' E)
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2
#Host#Fishes
#Host Body-Site#Gastrointestinal tract

Sequence information

16S sequences

  • @ref: 66136
  • description: Ottowia flava 16S ribosomal RNA gene, partial sequence
  • accession: MH790863
  • length: 1524
  • database: nuccore
  • NCBI tax ID: 2675430

External links

@ref: 66136

culture collection no.: DSM 107425, CGMCC 1.13650, NBRC 113500

straininfo link

  • @ref: 111812
  • straininfo: 396606

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny31147966Ottowia flava sp. nov., isolated from fish intestines.Shi SB, Li GD, Yang LF, Liu C, Jiang MG, Li QY, Wu JF, Zhang K, Jiang LQ, Shen NK, Jiang CL, Jiang YAntonie Van Leeuwenhoek10.1007/s10482-019-01284-62019Aerobiosis, Animals, Aquatic Organisms/microbiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fishes/*microbiology, Hydrogen-Ion Concentration, Intestines/*microbiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureTranscriptome
Phylogeny35604929Ottowia testudinis sp. nov., isolated from the cloaca of a giant Asian pond turtle (Heosemys grandis).Busse HJ, Kampfer P, Szostak MP, Spergser JInt J Syst Evol Microbiol10.1099/ijsem.0.0053482022Animals, Bacterial Typing Techniques, Base Composition, Cloaca, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *TurtlesTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66136Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107425Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107425)
68369Automatically annotated from API 20NE
111812Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396606.1