Strain identifier

BacDive ID: 159182

Type strain: No

Species: Lacrimispora celerecrescens

Strain Designation: WB02-MRS01

Strain history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; WB02-MRS01

NCBI tax ID(s): 29354 (species)

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General

@ref: 66005

BacDive-ID: 159182

DSM-Number: 105336

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive

description: Lacrimispora celerecrescens WB02-MRS01 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from wild boar.

NCBI tax id

  • NCBI tax id: 29354
  • Matching level: species

strain history

  • @ref: 66005
  • history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; WB02-MRS01

doi: 10.13145/bacdive159182.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Lacrimispora
  • species: Lacrimispora celerecrescens
  • full scientific name: Lacrimispora celerecrescens (Palop et al. 1989) Haas and Blanchard 2020

  • synonyms

    • @ref: 20215
    • synonym: Clostridium celerecrescens

@ref: 66005

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Lachnospiraceae

genus: Lacrimispora

species: Lacrimispora celerecrescens

full scientific name: Lacrimispora celerecrescens (Palop et al. 1989) Haas and Blanchard 2020

strain designation: WB02-MRS01

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66005WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
66005COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 66005
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 99.214

spore formation

@refspore formationconfidence
69480yes98.03
69481yes99

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66005---+---+/----------------------
66005--++-+++-+/------+-------------

Isolation, sampling and environmental information

isolation

  • @ref: 66005
  • sample type: wild boar
  • geographic location: Stratford, Ontario
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2958.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_286;97_316;98_1698;99_2958&stattab=map
  • Last taxonomy: Lacrimispora
  • 16S sequence: MN537490
  • Sequence Identity:
  • Total samples: 26414
  • soil counts: 3355
  • aquatic counts: 2526
  • animal counts: 19545
  • plant counts: 988

Safety information

risk assessment

  • @ref: 66005
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66005
  • description: [Clostridium] celerecrescens strain DSM 105336 16S ribosomal RNA gene, partial sequence
  • accession: MN537490
  • length: 1439
  • database: ena
  • NCBI tax ID: 29354

Genome sequences

  • @ref: 66792
  • description: Clostridium sp. WB02_MRS01
  • accession: 2605777.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 2605777

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
motileyes81.141no
gram-positiveyes55.093no
anaerobicyes98.915no
aerobicno98.847no
halophileno95.101no
spore-formingyes83.909no
glucose-utilyes86.242no
thermophileno98.679yes
flagellatedno56.274no
glucose-fermentyes71.946no

External links

@ref: 66005

culture collection no.: DSM 105336

straininfo link

  • @ref: 111685
  • straininfo: 405780

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66005Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105336Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105336)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111685Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405780.1