Archive BacDiveID:10.13145/bacdive159086.20230509.8.1

Strain identifier

BacDive ID: 159086

Type strain:

Species: Suilimivivens aceti

Strain Designation: Sanger 18, Sanger_18

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_18 <- H. Browne {2014}

NCBI tax ID(s): 1869227 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 65909

BacDive-ID: 159086

DSM-Number: 102261

keywords: genome sequence, Bacteria, mesophilic

description: Suilimivivens aceti Sanger 18 is a mesophilic bacterium that was isolated from faeces from healthy human.

NCBI tax id

NCBI tax id: 1869227
Matching level: species

strain history

@ref: 65909
history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_18 <- H. Browne {2014}

doi: 10.13145/bacdive159086.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Suilimivivens
species: Suilimivivens aceti
full scientific name: Suilimivivens aceti Hitch et al. 2022

@ref: 65909

domain: Bacteria

phylum: Bacillota

class: Clostridia

order: Eubacteriales

family: Lachnospiraceae

genus: Suilimivivens

species: Suilimivivens aceti

full scientific name: Suilimivivens aceti

strain designation: Sanger 18, Sanger_18

type strain: yes

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
65909	CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)	yes	https://mediadive.dsmz.de/medium/110a	Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water
65909	YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)	yes	https://mediadive.dsmz.de/medium/1611	Name: YCFA MEDIUM (modified) (DSMZ Medium 1611) Composition: Casitone 10.0 g/l Glucose 5.0 g/l NaHCO3 4.0 g/l Yeast extract 2.5 g/l Acetic acid 1.78695 g/l L-Cysteine HCl 1.0 g/l NaCl 0.9 g/l Propionic acid 0.62559 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l CaCl2 x 2 H2O 0.09 g/l n-Valeric acid 0.08451 g/l iso-Valeric acid 0.0837899 g/l iso-Butyric acid 0.07695 g/l MgSO4 x 7 H2O 0.045 g/l Hemin 0.01 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Lipoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water

culture temp

@ref: 65909
growth: positive
type: growth
temperature: 37
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 65909
sample type: faeces from healthy human
geographic location: Cambridgeshire, Hinxton
country: United Kingdom
origin.country: GBR
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Sequence information

Genome sequences

@ref: 66792
description: Suilimivivens aceti Sanger_18
accession: GCA_025567405
assembly level: scaffold
database: ncbi
NCBI tax ID: 2981774

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	yes	79.587	no
flagellated	yes	51.349	no
gram-positive	yes	78.254	no
anaerobic	yes	98.598	no
aerobic	no	98.589	no
halophile	no	86.184	no
spore-forming	yes	72.17	no
glucose-ferment	yes	72.868	no
thermophile	no	90.734	yes
glucose-util	yes	87.776	no

External links

@ref: 65909

culture collection no.: DSM 102261, JCM 34982

straininfo link

@ref: 111596
straininfo: 401668

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
65909	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102261	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102261)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
111596	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID401668.1