Strain identifier
BacDive ID: 159083
Type strain: 
Species: Crateriforma conspicua
Strain Designation: Malle 65, Mal65
Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Malle 65 <- A. Stieler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany;
NCBI tax ID(s): 2527996 (species)
version 8.1 (current version)
General
@ref: 65906
BacDive-ID: 159083
DSM-Number: 100706
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, other
description: Crateriforma conspicua Malle 65 is a mesophilic, Gram-negative, motile bacterium that was isolated from algae.
NCBI tax id
- NCBI tax id: 2527996
- Matching level: species
strain history
- @ref: 65906
- history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Malle 65 <- A. Stieler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany;
doi: 10.13145/bacdive159083.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/planctomycetota
- domain: Bacteria
- phylum: Planctomycetota
- class: Planctomycetia
- order: Pirellulales
- family: Pirellulaceae
- genus: Crateriforma
- species: Crateriforma conspicua
- full scientific name: Crateriforma conspicua Peeters et al. 2021
@ref: 65906
domain: Bacteria
phylum: Planctomycetes
class: Planctomycetia
order: Planctomycetales
family: Planctomycetaceae
genus: Crateriforma
species: Crateriforma conspicua
full scientific name: Crateriforma conspicua Peeters et al. 2020
strain designation: Malle 65, Mal65
type strain: yes
Morphology
cell morphology
- @ref: 68092
- gram stain: negative
- cell length: 1.5-2.1 µm
- cell width: 0.8-1.2 µm
- cell shape: other
- motility: yes
colony morphology
- @ref: 68092
- colony color: pink
Culture and growth conditions
culture medium
- @ref: 65906
- name: PLANCTOMYCES MEDIUM (DSMZ Medium 1560)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1560
- composition: Name: MARINES PLANCTOMYCES MEDIUM (DSMZ Medium 1560) Composition: Agar 15.0 g/l NaCl 11.735 g/l MgCl2 x 6 H2O 5.32 g/l HEPES 2.38 g/l Na2SO4 1.96 g/l N-Acetylglucosamine 0.8 g/l CaCl2 0.715 g/l MgSO4 x 7 H2O 0.594 g/l KCl 0.345 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.2 g/l NaHCO3 0.095 g/l CaCl2 x 2 H2O 0.0668 g/l KBr 0.048 g/l SrCl2 0.02 g/l H3BO3 0.013 g/l Na-Nitrilotriacetat 0.0015 g/l NaF 0.0015 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l MnSO4 x H2O 0.0005 g/l Na2MoO7O4 x 2 H2O 0.0002534 g/l Na-EDTA 0.00025 g/l Pyridoxine hydrochloride 0.0001 g/l Fe SO4 x 7 H2O 0.0001 g/l Co(NO3)2 x 6 H2O 0.0001 g/l ZnCl2 0.0001 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l NiCl2 x 6 H2O 5e-05 g/l H2SeO3 5e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l CuSO4 x 5 H2O 1e-05 g/l AlK(SO4)2 x 12 H2O 1e-05 g/l Na2MoO4 x 2 H2O 1e-05 g/l Na2WO4 x 2 H2O 1e-05 g/l Vitamin B12 1e-06 g/l Double distilled water Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 65906 | positive | growth | 28 | mesophilic |
| 68092 | positive | growth | 10-36 | |
| 68092 | positive | optimum | 36 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 68092 | positive | growth | 5.0-9.5 | alkaliphile |
| 68092 | positive | optimum | 7.5 |
Physiology and metabolism
observation
| @ref | observation |
|---|---|
| 68092 | pear-shaped |
| 68092 | divide by polar budding |
| 68092 | produce fibres originating from conspicuous crateriform structures |
| 68092 | form aggregates |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 65906 | algae | El Arenal, between Balneraio 4 and 5 | Spain | ESP | Europe | 39.5126 | 2.747 |
| 68092 | surface of an algae | Bay of Palma of the coast of El Arenal, Mallorca | Spain | ESP | Europe | 39.5126 | 2.747 |
isolation source categories
- Cat1: #Host
- Cat2: #Algae
Sequence information
16S sequences
- @ref: 68092
- description: Crateriforma conspicua strain Mal65 16S ribosomal RNA gene, partial sequence
- accession: MK559980
- length: 1521
- database: ena
- NCBI tax ID: 2527996
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Crateriforma conspicua Mal65 | GCA_007752935 | chromosome | ncbi | 2527996 |
| 66792 | Crateriforma conspicua Mal65 | 2883346072 | complete | img | 2527996 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 68092 | 57.8 | genome sequence analysis |
| 65906 | 57.8 |
External links
@ref: 65906
culture collection no.: DSM 100706, LMG 29792
straininfo link
- @ref: 111593
- straininfo: 400136
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 31894495 | Three marine strains constitute the novel genus and species Crateriforma conspicua in the phylum Planctomycetes. | Peeters SH, Wiegand S, Kallscheuer N, Jogler M, Heuer A, Jetten MSM, Rast P, Boedeker C, Rohde M, Jogler C | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01375-4 | 2020 | Animals, DNA, Bacterial/genetics, Fatty Acids, Phylogeny, *Planctomycetales/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 33582885 | Crateriforma spongiae sp. nov., isolated from a marine sponge and emended description of the genus "Crateriforma". | Kumar G, Kumar D, Jagadeeshwari U, Sreya PK, Shabbir A, Sasikala C, Ramana CV | Antonie Van Leeuwenhoek | 10.1007/s10482-020-01515-1 | 2021 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/analysis, Phospholipids, Phylogeny, *Porifera, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 65906 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100706 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100706) | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 68092 | Stijn H. Peeters, Sandra Wiegand, Nicolai Kallscheuer, Mareike Jogler, Anja Heuer, Mike S. M. Jetten, Patrick Rast, Christian Boedeker, Manfred Rohde, Christian Jogler | Three marine strains constitute the novel genus and species Crateriforma conspicua in the phylum Planctomycetes | 10.1007/s10482-019-01375-4 | Antonie Van Leeuwenhoek 113: 1797-1809 2020 | |
| 111593 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400136.1 |