Strain identifier

BacDive ID: 159050

Type strain: Yes

Species: Peptoniphilus faecalis

Strain Designation: 35-6-1

Strain history: B. Abt; DSMZ, Germany; DSM 104947 (=35-6-1) <-- T. Looft; ARS, USDA, USA.

NCBI tax ID(s): 2731255 (species)

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General

@ref: 65873

BacDive-ID: 159050

DSM-Number: 104947

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Peptoniphilus faecalis 35-6-1 is an anaerobe, mesophilic bacterium that was isolated from intestinal tract of a three month-old pig.

NCBI tax id

  • NCBI tax id: 2731255
  • Matching level: species

strain history

@refhistory
65873<- T. Looft, USDA-ARS-NADC;
67770B. Abt; DSMZ, Germany; DSM 104947 (=35-6-1) <-- T. Looft; ARS, USDA, USA.

doi: 10.13145/bacdive159050.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Peptoniphilus
  • species: Peptoniphilus faecalis
  • full scientific name: Peptoniphilus faecalis Ryu et al. 2021

  • synonyms

    • @ref: 20215
    • synonym: Peptoniphilus porci

@ref: 65873

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Peptoniphilaceae

genus: Peptoniphilus

species: Peptoniphilus porci

full scientific name: Peptoniphilus porci

strain designation: 35-6-1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65873BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
65873COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperature
65873positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 125438
  • oxygen tolerance: anaerobe
  • confidence: 92.78

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan+energy source
6838029985L-glutamate-degradation
6838016634raffinose-fermentation
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016199urea-hydrolysis
6838017632nitrate-reduction
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose-builds acid from
6836716199urea-hydrolysis
6836727897tryptophan+energy source

metabolite production

@refChebi-IDmetaboliteproduction
6838035581indoleyes
6836735581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole+
6836735581indole+

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase-
68380tyrosine arylamidase+
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380beta-glucosidase-3.2.1.21
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380alanine arylamidase-3.4.11.2
68380pyrrolidonyl arylamidase-3.4.19.3
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380alpha-arabinosidase-3.2.1.55
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380urease-3.5.1.5
68367catalase-1.11.1.6
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECAT
65873+----------+---------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
65873---------------+-+---+/--+--+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitudegeographic location
65873intestinal tract (colon mucosa) of a three month-old pigUSAUSANorth America42.0308-93.6319
67770Colonic mucosa of a pig in AmesUSAUSANorth AmericaIowa

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_2166.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15963;96_304;97_1393;98_1692;99_2166&stattab=map
  • Last taxonomy: Peptoniphilus
  • 16S sequence: MN537472
  • Sequence Identity:
  • Total samples: 9146
  • soil counts: 114
  • aquatic counts: 198
  • animal counts: 8752
  • plant counts: 82

Sequence information

16S sequences

  • @ref: 65873
  • description: Peptoniphilus faecalis strain 35-6-1 16S ribosomal RNA gene, partial sequence
  • accession: MN537472
  • length: 1412
  • database: nuccore
  • NCBI tax ID: 2652280

Genome sequences

  • @ref: 66792
  • description: Peptoniphilus porci 35-6-1
  • accession: GCA_001940285
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1261639

GC content

  • @ref: 67770
  • GC-content: 31.2
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes80.064no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes92.78no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.863no
125438spore-formingspore-formingAbility to form endo- or exosporesno67.839no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno93.556yes
125438motile2+flagellatedAbility to perform flagellated movementno86.143no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno65.5
125439BacteriaNetmotilityAbility to perform movementyes51
125439BacteriaNetgram_stainReaction to gram-stainingpositive74
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate anaerobe86.7

External links

@ref: 65873

culture collection no.: DSM 104947, JCM 34366

straininfo link

  • @ref: 111564
  • straininfo: 406259

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65873Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104947Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104947)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111564Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406259.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG