Strain identifier

BacDive ID: 159049

Type strain: Yes

Species: Cutibacterium porci

Strain Designation: WCA-380-WT-3A

Strain history: B. Abt; DSMZ, Germany; DSM 101006 (=WCA-380-WT-3A) <-- T. Clavel; RWTH Aachen, Germany.

NCBI tax ID(s): 2605781 (species)

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General

@ref: 65872

BacDive-ID: 159049

DSM-Number: 101006

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Cutibacterium porci WCA-380-WT-3A is a mesophilic bacterium that was isolated from feces; pig, 8 weeks old, wild type.

NCBI tax id

  • NCBI tax id: 2605781
  • Matching level: species

strain history

@refhistory
65872<- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-380-WT-3A
67770B. Abt; DSMZ, Germany; DSM 101006 (=WCA-380-WT-3A) <-- T. Clavel; RWTH Aachen, Germany.

doi: 10.13145/bacdive159049.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Cutibacterium
  • species: Cutibacterium porci
  • full scientific name: Cutibacterium porci Wylensek et al. 2021

@ref: 65872

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Propionibacteriales

family: Propionibacteriaceae

genus: Cutibacterium

species: Cutibacterium porci

full scientific name: Cutibacterium porci

strain designation: WCA-380-WT-3A

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.847
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65872WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
65872PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
65872COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
65872positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.977
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
65872-+-+-+-+/-+/--+------+++----++--+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
65872feces; pig, 8 weeks old, wild typeKranzberg (Bavaria)GermanyDEUEurope4811
67770Feces of a German Landrace pigFreisingGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

Safety information

risk assessment

  • @ref: 65872
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65872
  • description: Cutibacterium sp. DSM 101006 16S ribosomal RNA gene, partial sequence
  • accession: MN537454
  • length: 1457
  • database: ena
  • NCBI tax ID: 2652271

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cutibacterium porci WCA-380-WT-3AGCA_009696315contigncbi2605781
66792Cutibacterium sp. WCA-380-WT-3A2605781.3wgspatric2605781
66792Cutibacterium porci WCA-380-WT-3A2902680501draftimg2605781

GC content

  • @ref: 67770
  • GC-content: 58.8
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.945no
gram-positiveyes91.354no
anaerobicno54.328no
aerobicno81.123no
halophileno84.032no
spore-formingno91.876no
glucose-utilyes91.992no
flagellatedno98.068no
thermophileno80.421yes
glucose-fermentyes82.05no

External links

@ref: 65872

culture collection no.: DSM 101006, JCM 34386

straininfo link

  • @ref: 111563
  • straininfo: 398607

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65872Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101006Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101006)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111563Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398607.1