Strain identifier
BacDive ID: 159041
Type strain: 
Species: Rhodococcus coprophilus
Strain Designation: BL-253-APC-6A1W
Strain history: <- T. Clavel, University Hospital of RWTH Aachen, Aachen, Germany; BL-253-APC-6A1W
NCBI tax ID(s): 38310 (species)
General
@ref: 65864
BacDive-ID: 159041
DSM-Number: 106145
keywords: 16S sequence, mesophilic
description: Rhodococcus coprophilus BL-253-APC-6A1W is a mesophilic prokaryote that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 38310
- Matching level: species
strain history
- @ref: 65864
- history: <- T. Clavel, University Hospital of RWTH Aachen, Aachen, Germany; BL-253-APC-6A1W
doi: 10.13145/bacdive159041.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus coprophilus
- full scientific name: Rhodococcus coprophilus Rowbotham and Cross 1979 (Approved Lists 1980)
@ref: 65864
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus coprophilus
full scientific name: Rhodococcus coprophilus Rowbotham and Cross 1979 emend. Nouioui et al. 2018
strain designation: BL-253-APC-6A1W
type strain: no
Culture and growth conditions
culture medium
- @ref: 65864
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 65864
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65864
- sample type: feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_838.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_579;98_666;99_838&stattab=map
- Last taxonomy: Rhodococcus coprophilus subclade
- 16S sequence: MN537506
- Sequence Identity:
- Total samples: 2004
- soil counts: 872
- aquatic counts: 548
- animal counts: 511
- plant counts: 73
Sequence information
16S sequences
- @ref: 65864
- description: Rhodococcus sp. strain DSM 106145 16S ribosomal RNA gene, partial sequence
- accession: MN537506
- length: 1465
- database: ena
- NCBI tax ID: 1831
External links
@ref: 65864
culture collection no.: DSM 106145
straininfo link
- @ref: 111555
- straininfo: 399251
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65864 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106145 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106145) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111555 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399251.1 |