Strain identifier
BacDive ID: 159013
Type strain: 
Species: Oceanivirga miroungae
Strain Designation: ES3154-GLU (oral), ES3154-GLU
Strain history: <- D. V. Volokhov; ES3154-GLU
NCBI tax ID(s): 1130046 (species)
version 8.1 (current version)
General
@ref: 65836
BacDive-ID: 159013
DSM-Number: 109740
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Oceanivirga miroungae ES3154-GLU is a mesophilic bacterium that was isolated from swabs of the oral cavity of northern elephant seals .
NCBI tax id
- NCBI tax id: 1130046
- Matching level: species
strain history
- @ref: 65836
- history: <- D. V. Volokhov; ES3154-GLU
doi: 10.13145/bacdive159013.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Leptotrichiaceae
- genus: Oceanivirga
- species: Oceanivirga miroungae
- full scientific name: Oceanivirga miroungae Volokhov et al. 2020
@ref: 65836
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Leptotrichiaceae
genus: Oceanivirga
species: Oceanivirga miroungae
full scientific name: Oceanivirga miroungae Volokhov et al. 2020
strain designation: ES3154-GLU (oral), ES3154-GLU
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65836
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 65836
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65836
- sample type: swabs of the oral cavity of northern elephant seals (Mirounga angustirostris)
- host species: Mirounga angustirostris
- geographic location: Sausalito, CA
- country: USA
- origin.country: USA
- continent: North America
- latitude: 37.8555
- longitude: -122.484
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Aquatic mammal |
| #Infection | #Patient | #Swab |
| #Host Body-Site | #Oral cavity and airways |
Sequence information
16S sequences
- @ref: 65836
- description: Oceanivirga miroungae strain ES3154-GLU 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
- accession: MK828132
- length: 3588
- database: ena
- NCBI tax ID: 1130046
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Oceanivirga miroungae ES3154-GLU | GCA_902505095 | contig | ncbi | 1130046 |
| 66792 | Oceanivirga miroungae ES3154-GLU | 2889470768 | draft | img | 1130046 |
External links
@ref: 65836
culture collection no.: DSM 109740, CCUG 73653, NCTC 14411, ATCC TSD-189
straininfo link
- @ref: 111528
- straininfo: 401530
literature
- topic: Phylogeny
- Pubmed-ID: 32223835
- title: Oceanivirga miroungae sp. nov., isolated from oral cavity of northern elephant seal (Mirounga angustirostris).
- authors: Volokhov DV, Blom J, Amselle M, Delmonte P, Gao Y, Shen Z, Zhang S, Gulland FM, Chizhikov VE, Eisenberg T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004127
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, California, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/isolation & purification, Genes, Bacterial, Mouth/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S, Seals, Earless/*microbiology, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65836 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-109740 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109740) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111528 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401530.1 |