Strain identifier

BacDive ID: 158970

Type strain: No

Species: Eggerthella lenta

Strain Designation: AB12 #2

Strain history: <- J. Bisanz and P. J. Turnbaugh, University of California, San Francisco, USA;

NCBI tax ID(s): 84112 (species)

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General

@ref: 65793

BacDive-ID: 158970

DSM-Number: 110912

keywords: genome sequence, Bacteria, anaerobe, human pathogen

description: Eggerthella lenta AB12 #2 is an anaerobe human pathogen that was isolated from feces, human.

NCBI tax id

  • NCBI tax id: 84112
  • Matching level: species

strain history

  • @ref: 65793
  • history: <- J. Bisanz and P. J. Turnbaugh, University of California, San Francisco, USA;

doi: 10.13145/bacdive158970.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Eggerthella
  • species: Eggerthella lenta
  • full scientific name: Eggerthella lenta (Eggerth 1935) Wade et al. 1999

  • synonyms

    @refsynonym
    20215Eubacterium lentum
    20215Eggerthella lenta
    20215Bacteroides lentus

@ref: 65793

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Eggerthellales

family: Eggerthellaceae

genus: Eggerthella

species: Eggerthella lenta

full scientific name: Eggerthella lenta (Eggerth 1935) Wade et al. 1999 emend. Maruo et al. 2008 emend. Nouioui et al. 2018

strain designation: AB12 #2

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65793BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
65793COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 65793
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 91.379

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
65793-+----------+----------------

Isolation, sampling and environmental information

isolation

  • @ref: 65793
  • sample type: feces, human
  • geographic location: Guelph, Ontario
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

Safety information

risk assessment

  • @ref: 65793
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Eggerthella lenta AB12 #2
  • accession: GCA_003340445
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 84112

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes72.337no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes91.379no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no93.449no
69480spore-formingspore-formingAbility to form endo- or exosporesno71.376no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno90.797yes
69480flagellatedmotile2+Ability to perform flagellated movementno72.479no

External links

@ref: 65793

culture collection no.: DSM 110912

straininfo link

  • @ref: 111486
  • straininfo: 403634

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65793Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110912Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110912)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
111486Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403634.1