Strain identifier
BacDive ID: 158897
Type strain: 
Species: Pseudoramibacter porci
Strain Designation: RF-744-FAT-4
Strain history: B. Abt; DSMZ, Germany; DSM 106894 (=RF-744-FAT-4) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2606631 (species)
version 8.1 (current version)
General
@ref: 65719
BacDive-ID: 158897
DSM-Number: 106894
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Pseudoramibacter porci RF-744-FAT-4 is an anaerobe, mesophilic bacterium that was isolated from Aachener Minipig, WT, 4 months old, feces.
NCBI tax id
- NCBI tax id: 2606631
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65719 | <- T. Clavel; RWTH Aachen, Germany; RF-744-FAT-4 |
| 67770 | B. Abt; DSMZ, Germany; DSM 106894 (=RF-744-FAT-4) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive158897.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Pseudoramibacter
- species: Pseudoramibacter porci
- full scientific name: Pseudoramibacter porci Wylensek et al. 2021
@ref: 65719
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Eubacteriaceae
genus: Pseudoramibacter
species: Pseudoramibacter porci
full scientific name: Pseudoramibacter porci
strain designation: RF-744-FAT-4
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.817 | |
| 69480 | 99.623 | positive |
Culture and growth conditions
culture medium
- @ref: 65719
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 65719 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.593
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.995 |
| 69481 | no | 91 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 65719 | Aachener Minipig, WT, 4 months old, feces | Aachen | Germany | DEU | Europe |
| 67770 | Feces of an Aachen minipig in Germany |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
Sequence information
16S sequences
- @ref: 65719
- description: Eubacteriaceae bacterium DSM 106894 16S ribosomal RNA gene, partial sequence
- accession: MN537518
- length: 1473
- database: ena
- NCBI tax ID: 2652299
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoramibacter porci RF-744-FAT-4 | GCA_009696145 | contig | ncbi | 2606631 |
| 66792 | Eubacteriaceae bacterium RF-744-FAT-4 | 2606631.3 | wgs | patric | 2606631 |
GC content
- @ref: 67770
- GC-content: 49.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 91 | no |
| motile | no | 92.063 | no |
| gram-positive | yes | 75.71 | no |
| anaerobic | yes | 99.742 | no |
| aerobic | no | 98.868 | no |
| halophile | no | 85.502 | no |
| spore-forming | no | 84.253 | no |
| glucose-util | yes | 74.549 | no |
| flagellated | no | 96.593 | no |
| thermophile | no | 90.114 | no |
| glucose-ferment | yes | 70.01 | no |
External links
@ref: 65719
culture collection no.: DSM 106894, JCM 34374
straininfo link
- @ref: 111416
- straininfo: 397123
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65719 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106894 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106894) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 111416 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397123.1 |