Strain identifier

BacDive ID: 158699

Type strain: Yes

Species: Paenibacillus translucens

Strain Designation: CJ11

Strain history: C.-J. Cha; Chung-Ang Univ., South Korea; CJ11.

NCBI tax ID(s): 2025489 (species)

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General

@ref: 65438

BacDive-ID: 158699

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-negative, motile, rod-shaped, colony-forming

description: Paenibacillus translucens CJ11 is an aerobe, spore-forming, Gram-negative bacterium that forms circular colonies and was isolated from tidal flat sediment sample.

NCBI tax id

  • NCBI tax id: 2025489
  • Matching level: species

strain history

  • @ref: 67770
  • history: C.-J. Cha; Chung-Ang Univ., South Korea; CJ11.

doi: 10.13145/bacdive158699.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus translucens
  • full scientific name: Paenibacillus translucens Kim and Cha 2018

@ref: 65438

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus translucens

strain designation: CJ11

type strain: yes

Morphology

cell morphology

  • @ref: 65438
  • gram stain: negative
  • cell length: 2.0 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: monotrichous

colony morphology

  • @ref: 65438
  • colony color: translucent
  • colony shape: circular
  • medium used: Reasoner's 2A agar

Culture and growth conditions

culture medium

  • @ref: 65438
  • name: Reasoner's 2A agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65438positivegrowth20-37
65438positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
65438positivegrowth6-9alkaliphile
65438positivegrowth7

Physiology and metabolism

oxygen tolerance

  • @ref: 65438
  • oxygen tolerance: aerobe

spore formation

  • @ref: 65438
  • spore description: terminal endospores are formed in swollen sporangia
  • type of spore: endospore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
65438NaClpositivegrowth0-2 %
65438NaClpositiveoptimum0 %

observation

@refobservation
65438the predominant polar lipids are diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids, an unidentified glycolipid and several unidentified lipids
65438the cell-wall peptidoglycan contains meso-diaminopimelic acid
65438the isoprenoid quinone is MK-7
67770quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6543817128adipate-assimilation
6543827613amygdalin-builds acid from
6543818305arbutin-builds acid from
6543827689decanoate-assimilation
65438casein+hydrolysis
6543817057cellobiose-builds acid from
6543862968cellulose+hydrolysis
6543815963ribitol-builds acid from
6543817108D-arabinose-builds acid from
6543818333D-arabitol-builds acid from
6543815824D-fructose+builds acid from
6543828847D-fucose-builds acid from
6543812936D-galactose+builds acid from
6543817634D-glucose-assimilation
6543817634D-glucose+builds acid from
6543862318D-lyxose-builds acid from
6543816899D-mannitol-assimilation
6543816899D-mannitol-builds acid from
6543816024D-mannose-assimilation
6543816988D-ribose+builds acid from
6543817924D-sorbitol-builds acid from
6543816443D-tagatose-builds acid from
6543865327D-xylose-builds acid from
6543816813galactitol-builds acid from
6543817113erythritol-builds acid from
65438esculin ferric citrate+builds acid from
65438esculin ferric citrate+hydrolysis
6543828066gentiobiose-builds acid from
6543817754glycerol+builds acid from
6543828087glycogen-builds acid from
6543817268myo-inositol-builds acid from
6543815443inulin-builds acid from
6543830849L-arabinose-builds acid from
6543830849L-arabinose+assimilation
6543818403L-arabitol-builds acid from
6543818287L-fucose-builds acid from
6543862345L-rhamnose-builds acid from
6543817266L-sorbose-builds acid from
6543865328L-xylose-builds acid from
6543817716lactose+builds acid from
6543825115malate-assimilation
6543817306maltose+assimilation
6543817306maltose+builds acid from
654386731melezitose+builds acid from
6543828053melibiose-builds acid from
6543843943methyl alpha-D-mannoside-builds acid from
6543874863methyl beta-D-xylopyranoside-builds acid from
65438506227N-acetylglucosamine-assimilation
65438506227N-acetylglucosamine+builds acid from
6543817632nitrate-reduction
6543816301nitrite-reduction
6543818401phenylacetate-assimilation
65438potassium 2-dehydro-D-gluconate-builds acid from
65438potassium 5-dehydro-D-gluconate-builds acid from
6543832032potassium gluconate-assimilation
6543832032potassium gluconate-builds acid from
6543816634raffinose+builds acid from
6543817814salicin-builds acid from
6543853258sodium citrate-assimilation
6543828017starch+builds acid from
6543817992sucrose+builds acid from
6543827082trehalose-builds acid from
6543832528turanose+builds acid from
6543817151xylitol-builds acid from

enzymes

@refvalueactivityec
65438catalase+1.11.1.6
65438cytochrome oxidase-1.9.3.1
65438alkaline phosphatase+3.1.3.1
65438esterase (C 4)+
65438esterase Lipase (C 8)+
65438naphthol-AS-BI-phosphohydrolase+
65438beta-glucosidase+3.2.1.21
65438lipase (C 14)-
65438leucine arylamidase-3.4.11.1
65438valine arylamidase-
65438trypsin-3.4.21.4
65438alpha-chymotrypsin-3.4.21.1
65438acid phosphatase-3.1.3.2
65438alpha-galactosidase-3.2.1.22
65438beta-galactosidase-3.2.1.23
65438beta-glucuronidase-3.2.1.31
65438alpha-glucosidase-3.2.1.20
65438N-acetyl-beta-glucosaminidase-3.2.1.52
65438alpha-mannosidase-3.2.1.24
65438beta-D-fucosidase-3.2.1.38

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65438C10:03
    65438C12:01
    65438C14:03.3
    65438C16:016.8
    65438C18:00.6
    65438C19:00.4
    65438C12:0 iso1
    65438C14:0 iso4
    65438C14:0 iso3.1
    65438C16:0 iso10.2
    65438C17:0 iso1.2
    65438C12:0 anteiso0.6
    65438C15:0 anteiso43.6
    65438C17:0 anteiso4.1
    65438C19:0 anteiso0.3
    65438iso-C11:0 3OH0.5
    65438C16:1ω11c1.2
    65438C17:1 iso ω5c1.1
    65438C17:1 anteiso ω9c1.1
    65438C20:4ω6,9,12,15c0.1
    65438C16:1ω7c and/or C16:1ω6c0.5
    65438C19:1ω7c and/or C19:1ω6c0.6
  • type of FA analysis: whole cell analysis
  • incubation medium: Reasoner's 2A agar
  • agar/liquid: liquid
  • incubation temperature: 30
  • incubation time: 1.5
  • software version: Sherlock 6.1
  • library/peak naming table: RTSBA6 6.10
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment culture
65438tidal flat sediment sampleGanghwa-doRepublic of KoreaKORAsia37.6162126.377Reasoner's 2A
67770Tidal flat sediment from Ganghwa-doRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Tidal flat
#Environmental#Aquatic#Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_139162.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_37014;97_47048;98_61682;99_139162&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: MF619925
  • Sequence Identity:
  • Total samples: 166
  • soil counts: 131
  • aquatic counts: 4
  • animal counts: 18
  • plant counts: 13

Sequence information

16S sequences

@refdescriptionaccessiondatabase
6543816S rRNA gene sequenceMF619925nuccore
6543816S rRNA gene sequenceMF619898nuccore

GC content

  • @ref: 67770
  • GC-content: 51
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65438

culture collection no.: KACC 19304, JCM 32080

literature

  • topic: Phylogeny
  • Pubmed-ID: 29458566
  • title: Paenibacillus translucens sp. nov., isolated from tidal flat sediment.
  • authors: Kim YS, Cha CJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002613
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65438Yong-Seok Kim, Chang-Jun ChaPaenibacillus translucens sp. nov., isolated from tidal flat sediment10.1099/ijsem.0.002613IJSEM 68: 936-941 201829458566
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/