Strain identifier

BacDive ID: 158674

Type strain: Yes

Species: Kordia zosterae

Strain Designation: ZO2-23

Strain history: <- Chi Nam Seong, Sunchon National Univ.

NCBI tax ID(s): 1834927 (species)

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General

@ref: 65406

BacDive-ID: 158674

keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Kordia zosterae ZO2-23 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from from seaweed, Zostera marina.

NCBI tax id

  • NCBI tax id: 1834927
  • Matching level: species

strain history

@refhistory
67770C. N. Seong; Sunchon Natl. Univ., South Korea; ZO2-23.
67771<- Chi Nam Seong, Sunchon National Univ.

doi: 10.13145/bacdive158674.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Kordia
  • species: Kordia zosterae
  • full scientific name: Kordia zosterae Kim et al. 2017

@ref: 65406

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Kordia

species: Kordia zosterae

strain designation: ZO2-23

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
65406negative2.4-4.1 µm0.9-1.0 µmrod-shapedyes
67771rod-shapedyesgliding
67771negative

colony morphology

@refcolony sizecolony shapecolony colorincubation periodmedium used
654061 mmcircular
65406beige
654063 daysmarine agar

pigmentation

  • @ref: 65406
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

  • @ref: 65406
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65406positivegrowth10-35
65406positiveoptimum25-30mesophilic
67770positivegrowth20psychrophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
65406positivegrowth6-9alkaliphile
65406positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65406facultative anaerobe
67771facultative anaerobe

spore formation

  • @ref: 65406
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65406NaClpositivegrowth4.5 %(w/v)
65406NaClpositiveoptimum2-3 %

observation

@refobservation
65406growth occurs on MA but not on R2A, PCA, NA, MacConkey agar, TSA and Zobell agar
65406requires sea salts for growth
65406methanol extracts show the absence of typical spectrum of carotenoid pigment
65406major respiratory quinone detected is menaquinone 6 (MK-6)
65406polar lipid pattern comprises phosphatidyl-ethanolamine, two unidentified aminolipids, two unidentified glycolipids and three unidentified lipids
67770quinones: MK-6
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6540617128adipate-assimilation
6540622599arabinose-assimilation
6540627689decanoate-assimilation
65406casein+hydrolysis
6540617029chitin-hydrolysis
6540616991dna-hydrolysis
65406egg yolk-hydrolysis
6540628757fructose-builds acid from
6540628260galactose-builds acid from
6540617234glucose-assimilation
6540617234glucose-builds acid from
6540617368hypoxanthine-hydrolysis
6540617716lactose-builds acid from
6540625115malate-assimilation
6540617306maltose-assimilation
6540617306maltose-builds acid from
65406maltose hydrate-assimilation
6540629864mannitol-assimilation
6540629864mannitol-builds acid from
6540637684mannose-assimilation
6540637684mannose-builds acid from
65406506227N-acetylglucosamine-assimilation
6540617632nitrate-reduction
6540618401phenylacetate-assimilation
6540632032potassium gluconate-assimilation
6540626546rhamnose-builds acid from
6540628017starch+hydrolysis
6540617992sucrose-builds acid from
6540653424tween 20+hydrolysis
6540653426tween 80+hydrolysis
6540615318xanthine-hydrolysis
6540637166xylan-hydrolysis
6540618222xylose-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6540635581indoleno
6540615138sulfideno

enzymes

@refvalueactivityec
65406catalase+1.11.1.6
65406cytochrome oxidase-1.9.3.1
65406acid phosphatase+3.1.3.2
65406alkaline phosphatase+3.1.3.1
65406esterase (C 4)+
65406leucine arylamidase+3.4.11.1
65406naphthol-AS-BI-phosphohydrolase+
65406valine arylamidase+
65406esterase Lipase (C 8)+
65406N-acetyl-beta-glucosaminidase-3.2.1.52
65406alpha-chymotrypsin-3.4.21.1
65406cystine arylamidase-3.4.11.3
65406lipase (C 14)-
65406alpha-fucosidase-3.2.1.51
65406alpha-galactosidase-3.2.1.22
65406beta-galactosidase-3.2.1.23
65406alpha-glucosidase-3.2.1.20
65406beta-glucuronidase-3.2.1.31
65406beta-glucosidase-3.2.1.21
65406alpha-mannosidase-3.2.1.24
65406trypsin-3.4.21.4

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65406C15:03.4
    65406C16:02.9
    65406C18:01.6
    65406C15:0 iso21.2
    65406C16:0 iso1.1
    65406C15:0 iso 3OH10.3
    65406C16:0 iso 3OH2.5
    65406C17:0 iso 3OH17
    65406C15:0 anteiso1.2
    65406C15:1 iso F4.2
    65406C17:1ω6c1.2
    65406C16:1ω7c and/or C16:1ω6c14.9
    65406C17:1 iso I and/or C17:1 anteiso B1.1
    65406iso-C17:1ω9c and/or C16:0 10-methyl8.2
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar
  • incubation temperature: 30
  • incubation time: 3
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • instrument: Instant FAME method
  • method/protocol: Minnikin, 1984

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
65406from seaweed, Zostera marinaWest SeaRepublic of KoreaKORAsia
67770Seaweed sampleRepublic of KoreaKORAsia
67771From surface of seaweed, `Zostera marina`the West Sea near Seosan, Chungcheongnam-doRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Aquatic plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_152657.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16095;96_2041;97_21167;98_26529;99_152657&stattab=map
  • Last taxonomy: Kordia zosterae
  • 16S sequence: KX078451
  • Sequence Identity:
  • Total samples: 165
  • soil counts: 1
  • aquatic counts: 131
  • animal counts: 32
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 65406
  • description: 16S rRNA gene sequences
  • accession: KX078451
  • database: nuccore

GC content

@refGC-contentmethod
6540631.7high performance liquid chromatography (HPLC)
6777131.7

External links

@ref: 65406

culture collection no.: KCTC 52268, JCM 31799

literature

  • topic: Phylogeny
  • Pubmed-ID: 28984217
  • title: Kordia zosterae sp. nov., isolated from the seaweed, Zostera marina.
  • authors: Kim DI, Lee JH, Kim MS, Seong CN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002379
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seaweed/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Zosteraceae/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65406Dae In Kim, Ji Hee Lee, Mi Sun Kim, Chi Nam SeongKordia zosterae sp. nov., isolated from the seaweed, Zostera marina10.1099/ijsem.0.002379IJSEM 67: 4790-4795 201728984217
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/