Strain identifier

BacDive ID: 158598

Type strain: Yes

Species: Pseudomonas fluvialis

Strain Designation: ASS-1

NCBI tax ID(s): 1793966 (species)

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General

@ref: 65314

BacDive-ID: 158598

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Pseudomonas fluvialis ASS-1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from sediment samples.

NCBI tax id

  • NCBI tax id: 1793966
  • Matching level: species

doi: 10.13145/bacdive158598.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas fluvialis
  • full scientific name: Pseudomonas fluvialis Sudan et al. 2018

  • synonyms

    @refsynonym
    20215Pseudomonas pharmacofabricae
    20215Pseudomonas pharmafabricae

@ref: 65314

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas fluvialis

strain designation: ASS-1

type strain: yes

Morphology

cell morphology

  • @ref: 65314
  • gram stain: negative
  • cell length: 0.8-1.5 µm
  • cell width: 0.1-0.2 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: monotrichous, polar

colony morphology

  • @ref: 65314
  • colony color: yellow
  • colony shape: circular
  • medium used: tryptic soy agar

Culture and growth conditions

culture medium

  • @ref: 65314
  • name: tryptic soy agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65314positivegrowth15-42
65314positiveoptimum25-30mesophilic

culture pH

@refabilitytypepHPH range
65314positivegrowth5-12alkaliphile
65314positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

  • @ref: 65314
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
65314NaClpositivegrowth0-2 %
65314NaClnogrowth5 %
65314NaClnogrowth7 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6531417128adipate-assimilation
6531427613amygdalin-assimilation
6531427689decanoate+assimilation
65314casein-hydrolysis
6531416947citrate-assimilation
6531417634D-glucose-assimilation
6531416899D-mannitol-assimilation
6531416024D-mannose-assimilation
6531463150D-rhamnose-assimilation
65314esculin ferric citrate-assimilation
653145291gelatin-assimilation
6531417234glucose-fermentation
6531417268myo-inositol-assimilation
6531430849L-arabinose-assimilation
6531418019L-lysine-assimilation
6531415729L-ornithine-assimilation
6531425115malate+assimilation
6531428053melibiose-assimilation
65314506227N-acetylglucosamine-assimilation
6531417632nitrate-reduction
6531418401phenylacetate-assimilation
6531430911sorbitol-assimilation
6531428017starch+hydrolysis
6531417992sucrose-assimilation
6531416199urea-assimilation

metabolite production

@refChebi-IDmetaboliteproduction
6531415688acetoinno
6531416136hydrogen sulfideno
6531435581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
6531417234glucose-
6531415688acetoin-

enzymes

@refvalueactivityec
65314catalase+1.11.1.6
65314cytochrome oxidase+1.9.3.1
65314urease-3.5.1.5
65314cystine arylamidase-3.4.11.3
65314alpha-galactosidase-3.2.1.22
65314beta-galactosidase-3.2.1.23
65314beta-glucuronidase-3.2.1.31
65314beta-glucosidase-3.2.1.21
65314alpha-glucosidase-3.2.1.20
65314N-acetyl-beta-glucosaminidase-3.2.1.52
65314alpha-mannosidase-3.2.1.24
65314alpha-fucosidase-3.2.1.51
65314esterase (C 4)+
65314esterase Lipase (C 8)+
65314lipase (C 14)+
65314leucine arylamidase+3.4.11.1
65314naphthol-AS-BI-phosphohydrolase+

Isolation, sampling and environmental information

isolation

  • @ref: 65314
  • sample type: sediment samples
  • geographic location: river Ganges, Triveni Sangam, Allahabad
  • country: India
  • origin.country: IND
  • continent: Asia
  • latitude: 25.4291
  • longitude: 81.8936
  • enrichment culture: tryptic soy agar
  • enrichment culture temperature: 30
  • isolation procedure: serial dilution method

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_30391.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_22614;99_30391&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: KU248754
  • Sequence Identity:
  • Total samples: 3897
  • soil counts: 394
  • aquatic counts: 2405
  • animal counts: 986
  • plant counts: 112

Sequence information

16S sequences

  • @ref: 65314
  • description: 16S rRNA gene sequence
  • accession: KU248754
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas fluvialis CCM 8778GCA_014635625contigncbi1793966
66792Pseudomonas fluvialis ASS-1GCA_002234375contigncbi1793966
66792Pseudomonas fluvialis strain CCM 87781793966.11wgspatric1793966
66792Pseudomonas fluvialis ASS-12791355545draftimg1793966

GC content

  • @ref: 65314
  • GC-content: 62.7
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.09no
gram-positiveno99.07yes
anaerobicno96.246yes
aerobicyes85.7yes
halophileno76.374no
spore-formingno95.105no
glucose-utilno62.405no
flagellatedyes88.897yes
thermophileno98.998no
glucose-fermentno93.842no

External links

@ref: 65314

culture collection no.: KCTC 52437, CCM 8778

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29239716Pseudomonas fluvialis sp. nov., a novel member of the genus Pseudomonas isolated from the river Ganges, India.Sudan SK, Pal D, Bisht B, Kumar N, Chaudhry V, Patil P, Sahni G, Mayilraj S, Krishnamurthi SInt J Syst Evol Microbiol10.1099/ijsem.0.0025202017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, India, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, *Water MicrobiologyTranscriptome
Phylogeny30601113Pseudomonas mangrovi sp. nov., isolated from mangrove soil.Ye Y, Chen C, Ren Y, Wang R, Zhang C, Han S, Ju Z, Zhao Z, Sun C, Wu MInt J Syst Evol Microbiol10.1099/ijsem.0.0031412019Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Rhizophoraceae/*microbiology, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65314Sarabjeet Kour Sudan, Deepika Pal, Bhawana Bisht, Narender Kumar, Vasvi Chaudhry, Prabhu Patil, Girish Sahni, Shanmugam Mayilraj, Srinivasan KrishnamurthiPseudomonas fluvialis sp. nov., a novel member of the genus Pseudomonas isolated from the river Ganges, India10.1099/ijsem.0.002520IJSEM 68: 402-408 201829239716
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/