Strain identifier

BacDive ID: 158530

Type strain: Yes

Species: Roseomonas elaeocarpi

Strain Designation: PN2

NCBI tax ID(s): 907779 (species)

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General

@ref: 65207

BacDive-ID: 158530

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, coccus-shaped, colony-forming

description: Roseomonas elaeocarpi PN2 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from olive leaf.

NCBI tax id

  • NCBI tax id: 907779
  • Matching level: species

doi: 10.13145/bacdive158530.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas elaeocarpi
  • full scientific name: Roseomonas elaeocarpi Damtab et al. 2016

@ref: 65207

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas elaeocarpi

strain designation: PN2

type strain: yes

Morphology

cell morphology

  • @ref: 65207
  • gram stain: negative
  • cell length: 1.0-1.3 µm
  • cell width: 0.7-1.0 µm
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 65207
  • colony color: pink
  • colony shape: circular
  • medium used: glycerol peptone agar

Culture and growth conditions

culture medium

  • @ref: 65207
  • name: glycerol peptone agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65207positivegrowth15-35
65207positiveoptimum30mesophilic

culture pH

@refabilitytypepH
65207positivegrowth5.0-7.5
65207positiveoptimum6.0

Physiology and metabolism

oxygen tolerance

  • @ref: 65207
  • oxygen tolerance: aerobe

spore formation

  • @ref: 65207
  • type of spore: endospore
  • spore formation: no

halophily

  • @ref: 65207
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 1.02 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6520715588D-malate+assimilation
6520715588D-malate+carbon source
6520716651(S)-lactate-assimilation
6520715589L-malate+assimilation
65207167632-oxobutanoate-assimilation
65207309162-oxoglutarate+assimilation
65207309162-oxoglutarate+carbon source
65207739183-O-methyl-D-glucose-assimilation
65207181014-hydroxyphenylacetic acid-assimilation
6520730089acetate-assimilation
6520730089acetate-carbon source
6520713705acetoacetate+assimilation
6520717128adipate-assimilation
6520717925alpha-D-glucose-assimilation
6520717925alpha-D-glucose-carbon source
65207645522-hydroxybutyrate-assimilation
6520736219alpha-lactose-assimilation
6520729016arginine-hydrolysis
6520773706bromosuccinate-assimilation
6520727689decanoate-assimilation
6520785146carboxymethylcellulose-hydrolysis
65207casein-hydrolysis
6520717057cellobiose-assimilation
6520717029chitin-hydrolysis
6520716947citrate-carbon source
6520716947citrate+assimilation
6520716947citrate+carbon source
6520718333D-arabitol-assimilation
6520729990D-aspartate-assimilation
6520715824D-fructose+assimilation
6520715824D-fructose+carbon source
6520778697D-fructose 6-phosphate+assimilation
6520728847D-fucose+assimilation
6520712936D-galactose+assimilation
6520712936D-galactose+carbon source
6520718024D-galacturonic acid+assimilation
6520730612D-glucarate+assimilation
6520730612D-glucarate+carbon source
652078391D-gluconate+assimilation
652078391D-gluconate+carbon source
6520717634D-glucose-assimilation
6520717634D-glucose-builds acid from
6520714314D-glucose 6-phosphate-assimilation
6520715748D-glucuronate+assimilation
6520716899D-mannitol-assimilation
6520716899D-mannitol-builds acid from
6520716024D-mannose+assimilation
6520716024D-mannose+carbon source
6520717924D-sorbitol-assimilation
6520717924D-sorbitol-builds acid from
6520765327D-xylose-assimilation
6520765327D-xylose-builds acid from
6520723652dextrin+assimilation
65207370543-hydroxybutyrate-assimilation
652074853esculin-hydrolysis
6520715740formate-assimilation
6520716537galactarate+assimilation
6520716537galactarate+carbon source
6520716865gamma-aminobutyric acid-assimilation
652075291gelatin-hydrolysis
6520728066gentiobiose-assimilation
6520717234glucose-fermentation
6520732323glucuronamide+assimilation
6520717754glycerol-assimilation
6520717754glycerol-carbon source
6520770744glycine-proline-assimilation
6520716235guanine-hydrolysis
6520717368hypoxanthine-hydrolysis
6520717596inosine-assimilation
6520716977L-alanine-assimilation
6520730849L-arabinose-assimilation
6520716467L-arginine-assimilation
6520729991L-aspartate-assimilation
6520718287L-fucose-assimilation
6520718287L-fucose-carbon source
6520717464L-galactonic acid gamma-lactone+assimilation
6520729985L-glutamate-assimilation
6520715971L-histidine-assimilation
6520718183L-pyroglutamic acid-assimilation
6520762345L-rhamnose-assimilation
6520762345L-rhamnose-carbon source
6520717115L-serine-assimilation
6520717716lactose-assimilation
6520717716lactose-builds acid from
6520717306maltose-assimilation
6520728053melibiose-assimilation
6520728053melibiose-carbon source
6520774611methyl (R)-lactate-assimilation
65207320055methyl beta-D-glucopyranoside-assimilation
6520751850methyl pyruvate-assimilation
6520717268myo-inositol-assimilation
6520763154N-acetyl-beta-D-mannosamine-assimilation
6520728037N-acetylgalactosamine-assimilation
65207506227N-acetylglucosamine-assimilation
6520735418n-acetylneuraminate-assimilation
6520717632nitrate-reduction
6520717309pectin-assimilation
6520718401phenylacetate-assimilation
6520732032potassium gluconate-assimilation
6520717272propionate-assimilation
6520717272propionate-carbon source
6520726490quinate-assimilation
6520726490quinate-carbon source
6520716634raffinose-assimilation
6520717814salicin-assimilation
6520753258sodium citrate-assimilation
6520717164stachyose-assimilation
6520728017starch-hydrolysis
6520717992sucrose-assimilation
6520717992sucrose-builds acid from
6520727082trehalose-assimilation
6520732528turanose-assimilation
6520753423tween 40-hydrolysis
6520753426tween 80-hydrolysis
6520718186tyrosine-hydrolysis
6520715318xanthine-hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6520717076streptomycinyesyes10 µg (disc)
6520727902tetracyclineyesyes10 µg (disc)
6520717698chloramphenicolyesyes30 µg (disc)
652076104kanamycinyesyes30 µg (disc)
6520727902tetracyclineyesyes30 µg (disc)
6520728971ampicillinyesyes10 µg (disc)
6520718208penicillin gyesyes10 Unit (disc)

metabolite production

@refChebi-IDmetaboliteproduction
6520715688acetoinno
6520716136hydrogen sulfideno
6520735581indoleno
6520716199ureayes

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testcitrate test
6520717234glucose-
6520715688acetoin-
6520716947citrate-

enzymes

@refvalueactivityec
65207catalase+1.11.1.6
65207cytochrome oxidase+1.9.3.1
65207alkaline phosphatase+3.1.3.1
65207esterase (C 4)+
65207esterase Lipase (C 8)+
65207naphthol-AS-BI-phosphohydrolase+
65207beta-galactosidase-3.2.1.23
65207lipase (C 14)-
65207leucine arylamidase-3.4.11.1
65207valine arylamidase-
65207cystine arylamidase-3.4.11.3
65207trypsin-3.4.21.4
65207alpha-chymotrypsin-3.4.21.1
65207acid phosphatase-3.1.3.2
65207alpha-galactosidase-3.2.1.22
65207beta-glucuronidase-3.2.1.31
65207alpha-glucosidase-3.2.1.20
65207beta-glucosidase-3.2.1.21
65207N-acetyl-beta-glucosaminidase-3.2.1.52
65207alpha-mannosidase-3.2.1.24
65207alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

  • @ref: 65207
  • sample type: olive leaf
  • geographic location: Ubon Ratchathani province
  • country: Thailand
  • origin.country: THA
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Plant#Leaf (Phyllosphere)
#Host#Plants#Tree

taxonmaps

  • @ref: 69479
  • File name: preview.99_24991.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_12499;97_15173;98_18789;99_24991&stattab=map
  • Last taxonomy: Roseomonas elaeocarpi subclade
  • 16S sequence: AB594202
  • Sequence Identity:
  • Total samples: 3439
  • soil counts: 945
  • aquatic counts: 484
  • animal counts: 1481
  • plant counts: 529

Sequence information

16S sequences

  • @ref: 65207
  • description: 16S rRNA gene sequence
  • accession: AB594202
  • database: nuccore

GC content

  • @ref: 65207
  • GC-content: 70.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65207

culture collection no.: BCC 44864, NBRC 107871

literature

  • topic: Phylogeny
  • Pubmed-ID: 26552692
  • title: Roseomonas elaeocarpi sp. nov., isolated from olive (Elaeocarpus hygrophilus Kurz.) phyllosphere.
  • authors: Damtab J, Nutaratat P, Boontham W, Srisuk N, Duangmal K, Yurimoto H, Sakai Y, Muramatsu Y, Nakagawa Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000748
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Elaeocarpaceae/*microbiology, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Ubiquinone/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65207Jenjira Damtab, Pumin Nutaratat, Wanatchaporn Boontham, Nantana Srisuk, Kannika Duangmal, Hiroya Yurimoto, Yasuyoshi Sakai, Yuki Muramatsu, Yasuyoshi NakagawaRoseomonas elaeocarpi sp. nov., isolated from olive (Elaeocarpus hygrophilus Kurz.) phyllosphere10.1099/ijsem.0.000748IJSEM 66: 474-480 201626552692
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/