Archive BacDiveID:10.13145/bacdive158492.20230509.8.1

Strain identifier

BacDive ID: 158492

Type strain:

Species: Salinibacterium hongtaonis

Strain Designation: 194

Strain history: <- L. Junqin, CDC; 194

NCBI tax ID(s): 2079791 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 65168

BacDive-ID: 158492

DSM-Number: 106171

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-positive

description: Salinibacterium hongtaonis 194 is a psychrophilic, Gram-positive bacterium that was isolated from Tibetan antelope.

NCBI tax id

NCBI tax id: 2079791
Matching level: species

strain history

@ref: 65168
history: <- L. Junqin, CDC; 194

doi: 10.13145/bacdive158492.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Microbacteriaceae
genus: Salinibacterium
species: Salinibacterium hongtaonis
full scientific name: Salinibacterium hongtaonis Li et al. 2019

@ref: 65168

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Salinibacterium

species: Salinibacterium hongtaonis

full scientific name: Salinibacterium hongtaonis Li et al. 2019

strain designation: 194

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: positive
confidence: 100

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
65168	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	yes	https://mediadive.dsmz.de/medium/514	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
65168	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	yes	https://mediadive.dsmz.de/medium/693	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@ref: 65168
growth: positive
type: growth
temperature: 20
range: psychrophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69480	no	99.999
69481	no	100

Isolation, sampling and environmental information

isolation

@ref: 65168
sample type: Tibetan antelope
geographic location: Kekexili, Qinghai Province
country: China
origin.country: CHN
continent: Asia

isolation source categories

Cat1: #Host
Cat2: #Mammals
Cat3: #Caprinae (Sheep/Goat)

Sequence information

16S sequences

@ref: 65168
description: Salinibacterium sp. strain 194 16S ribosomal RNA gene, partial sequence
accession: MH299814
length: 1523
database: ena
NCBI tax ID: 1915057

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Salinibacterium hongtaonis CGMCC 1.16371	GCA_003065485	complete	ncbi	2079791
66792	Salinibacterium sp. CGMCC 1.16371	2079791.3	complete	patric	2079791
66792	Salinibacterium hongtaonis CGMCC 1.16371	2788500349	complete	img	2079791

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
flagellated	no	92.073	no
gram-positive	yes	90.517	no
anaerobic	no	99.141	no
halophile	no	87.978	no
spore-forming	no	93.034	no
glucose-util	yes	88.224	no
aerobic	yes	93.852	no
thermophile	no	98.984	yes
motile	yes	61.739	no
glucose-ferment	no	90.995	no

External links

@ref: 65168

culture collection no.: DSM 106171, CGMCC 1.16371

straininfo link

@ref: 111287
straininfo: 403553

literature

topic: Phylogeny
Pubmed-ID: 30747615
title: Salinibacterium hongtaonis sp. nov., isolated from faeces of Tibetan antelope (Pantholops hodgsonii) on the Qinghai-Tibet Plateau.
authors: Li J, Lu S, Jin D, Yang J, Lai XH, Zhang G, Tian Z, Zhu W, Pu J, Wu X, Huang Y, Wang S, Xu J
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.003277
year: 2019
mesh: Actinobacteria/*classification/isolation & purification, Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial, Fatty Acids, Feces/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Vitamin K 2/chemistry
topic2: Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
65168	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-106171	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106171)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1
111287	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID403553.1