Strain identifier

BacDive ID: 158438

Type strain: Yes

Species: Arthrobacter silvisoli

Strain Designation: NEAU-SA1

Strain history: <- J. Zhao, School of Life Science,Northeast Agricultural University; NEAU-SA1 <- R. Yan

NCBI tax ID(s): 2291022 (species)

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General

@ref: 65114

BacDive-ID: 158438

DSM-Number: 106716

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Arthrobacter silvisoli NEAU-SA1 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from soil.

NCBI tax id

  • NCBI tax id: 2291022
  • Matching level: species

strain history

  • @ref: 65114
  • history: <- J. Zhao, School of Life Science,Northeast Agricultural University; NEAU-SA1 <- R. Yan

doi: 10.13145/bacdive158438.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter silvisoli
  • full scientific name: Arthrobacter silvisoli Yan et al. 2018

@ref: 65114

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter silvisoli

full scientific name: Arthrobacter silvisoli Yan et al. 2018

strain designation: NEAU-SA1

type strain: yes

Morphology

cell morphology

@refgram staincell shape
66783positiverod-shaped
66783coccus-shaped

colony morphology

  • @ref: 66783
  • colony color: pale yellow
  • colony shape: circular
  • incubation period: 1 day
  • medium used: LB (Luria-Bertani) agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65114TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
66783LB (Luria-Bertani) agaryes

culture temp

@refgrowthtypetemperaturerange
65114positivegrowth28mesophilic
66783positiveoptimum28mesophilic
66783positivegrowth10-40

culture pH

@refabilitytypepHPH range
66783positiveoptimum7
66783positivegrowth5-10alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 66783
  • oxygen tolerance: aerobe

spore formation

  • @ref: 66783
  • type of spore: endospore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
66783NaClpositivegrowth0-5 %(w/v)
66783NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 66783
  • observation: Cells have a rods-coccus cycle and are non-flagellated.

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6678353258citric acid+assimilation
66783milk+assimilation
6678312936D-galactose-builds acid from
6678315963ribitol-builds acid from
6678316024D-mannose-builds acid from
6678316443D-tagatose-builds acid from
6678316813galactitol-builds acid from
6678316988D-ribose-builds acid from
6678317057cellobiose-builds acid from
6678317108D-arabinose-builds acid from
6678317266L-sorbose-builds acid from
6678317716lactose-builds acid from
6678317814salicin-builds acid from
6678317924D-sorbitol-builds acid from
6678318305arbutin-builds acid from
6678318403L-arabitol-builds acid from
6678327613amygdalin-builds acid from
6678328847D-fucose-builds acid from
6678330849L-arabinose-builds acid from
6678332032potassium gluconate-builds acid from
6678343943methyl alpha-D-mannoside-builds acid from
6678359640N-acetylglucosamine-builds acid from
6678362318D-lyxose-builds acid from
6678365327D-xylose-builds acid from
6678365328L-xylose-builds acid from
66783320061methyl alpha-D-glucopyranoside-builds acid from
66783potassium 2-dehydro-D-gluconate-builds acid from
66783potassium 5-dehydro-D-gluconate-builds acid from
667836731melezitose+builds acid from
6678315443inulin+builds acid from
6678315824D-fructose+builds acid from
6678316634raffinose+builds acid from
6678316899D-mannitol+builds acid from
6678317113erythritol+builds acid from
6678317151xylitol+builds acid from
6678317268myo-inositol+builds acid from
6678317306maltose+builds acid from
6678317634D-glucose+builds acid from
6678317754glycerol+builds acid from
6678317992sucrose+builds acid from
6678318287L-fucose+builds acid from
6678318333D-arabitol+builds acid from
6678327082trehalose+builds acid from
6678328017starch+builds acid from
6678328053melibiose+builds acid from
6678328066gentiobiose+builds acid from
6678328087glycogen+builds acid from
6678332528turanose+builds acid from
6678362345L-rhamnose+builds acid from
6678374863methyl beta-D-xylopyranoside+builds acid from
66783esculin ferric citrate+builds acid from
6678317924D-sorbitol-carbon source
6678312936D-galactose+carbon source
6678315824D-fructose+carbon source
6678316634raffinose+carbon source
6678316899D-mannitol+carbon source
6678316988D-ribose+carbon source
6678317268myo-inositol+carbon source
6678317306maltose+carbon source
6678317634D-glucose+carbon source
6678317716lactose+carbon source
6678317992sucrose+carbon source
6678330849L-arabinose+carbon source
6678337684mannose+carbon source
6678362345L-rhamnose+carbon source
6678365327D-xylose+carbon source
6678362968cellulose-degradation
6678317234glucose-fermentation
667835291gelatin-hydrolysis
6678328017starch-hydrolysis
6678353423tween 40-hydrolysis
6678353424tween 20-hydrolysis
6678353426tween 80-hydrolysis
66783casein+hydrolysis
6678315428glycine+nitrogen source
6678316467L-arginine+nitrogen source
6678316857L-threonine+nitrogen source
6678316919creatine+nitrogen source
6678316977L-alanine+nitrogen source
6678317115L-serine+nitrogen source
6678317196L-asparagine+nitrogen source
6678317203L-proline+nitrogen source
6678317895L-tyrosine+nitrogen source
6678318050L-glutamine+nitrogen source
6678329985L-glutamate+nitrogen source
6678329991L-aspartate+nitrogen source
6678317632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6678315688acetoinno
6678316136hydrogen sulfideno
6678335581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
6678317234glucose-
6678315688acetoin-

enzymes

@refvalueactivityec
66783arginine dihydrolase+3.5.3.6
66783beta-galactosidase+3.2.1.23
66783catalase+1.11.1.6
66783urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureisolation procedure
65114soilHunan province, ZhangjiajieChinaCHNAsia
66783forest soil sampleZhangjiajie City, Hunan ProvinceChinaCHNAsia28.8925109.677sodium succinate-asparagine agarstandard dilution plating technique

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 66783
  • description: Arthrobacter sp. NEAU-SA1 16S ribosomal RNA gene, partial sequence
  • accession: MH063845
  • length: 1517
  • database: ena
  • NCBI tax ID: 2291022

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter silvisoli NEAU-SA1GCA_003369445contigncbi2291022
66792Arthrobacter silvisoli NEAU-SA12869329445draftimg2291022

GC content

@refGC-contentmethod
6511466.74
6678366.74genome sequence analysis

External links

@ref: 65114

culture collection no.: DSM 106716, CCTCC AB 2017271

straininfo link

  • @ref: 111239
  • straininfo: 402281

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny30351271Arthrobacter silvisoli sp. nov., isolated from forest soil.Yan R, Fu Y, Liu D, Jiang S, Ju H, Guo X, Guo X, Wang X, Zhang J, Xiang WInt J Syst Evol Microbiol10.1099/ijsem.0.0030852018Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31329533Arthrobacter celericrescens sp. nov., isolated from forest soil.Yan R, Liu D, Fu Y, Zhang Y, Ju H, Zhao J, Wang X, Zhang J, Xiang WInt J Syst Evol Microbiol10.1099/ijsem.0.0035972019Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65114Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106716Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106716)
66783Rui Yan, Yansong Fu, Dongli Liu, Shanwen Jiang, Hanxun Ju, Xiaokui Guo, Xiaowei Guo, Xiangjing Wang, Ji Zhang, Wensheng XiangArthrobacter silvisoli sp. nov., isolated from forest soil10.1099/ijsem.0.003085IJSEM 68: 3892-3896 201830351271
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
111239Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402281.1