Strain identifier

BacDive ID: 158429

Type strain: Yes

Species: Staphylococcus cornubiensis

Strain Designation: NW1

Strain history: <- M. Vos, Univ. Exeter, Penryn, United Kingdom; NW1 <- J. Lee

NCBI tax ID(s): 1986155 (species)

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General

@ref: 65105

BacDive-ID: 158429

DSM-Number: 105366

keywords: genome sequence, Bacteria, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus cornubiensis NW1 is a mesophilic, Gram-positive, coccus-shaped bacterium that was isolated from skin of a 64-year-old man with cellulitis.

NCBI tax id

  • NCBI tax id: 1986155
  • Matching level: species

strain history

  • @ref: 65105
  • history: <- M. Vos, Univ. Exeter, Penryn, United Kingdom; NW1 <- J. Lee

doi: 10.13145/bacdive158429.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus cornubiensis
  • full scientific name: Staphylococcus cornubiensis Murray et al. 2018

@ref: 65105

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus cornubiensis

full scientific name: Staphylococcus cornubiensis Murray et al. 2018

strain designation: NW1

type strain: yes

Morphology

cell morphology

@refgram staincell shapeconfidence
66709positivecoccus-shaped
69480positive100

colony morphology

  • @ref: 66709
  • type of hemolysis: beta
  • hemolysis ability: 1
  • colony size: 2-3 mm
  • colony color: white
  • incubation period: 1 day
  • medium used: sheep blodd agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65105TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
65105COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
66709sheep blodd agaryes

culture temp

  • @ref: 65105
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.788

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6670912936D-galactose-builds acid from
6670916634raffinose-builds acid from
6670917306maltose-builds acid from
6670917924D-sorbitol-builds acid from
6670965327D-xylose-builds acid from
6670916024D-mannose+builds acid from
6670916899D-mannitol+builds acid from
6670916988D-ribose+builds acid from
6670917716lactose+builds acid from
6670917992sucrose+builds acid from
6670927082trehalose+builds acid from
6837516199urea+hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837517306maltose+fermentation
6837527082trehalose+fermentation
6837516634raffinose-fermentation
6837516988D-ribose+fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6670959062polymyxinyesyes4000 µg/mL
6837528368novobiocinyesyes1.8 µg

enzymes

@refvalueactivityec
66709alpha-galactosidase-3.2.1.22
66709alpha-mannosidase-3.2.1.24
66709beta-galactopyranosidase-
66709beta-glucuronidase-3.2.1.31
66709L-aspartate arylamidase-3.4.11.21
66709proline-arylamidase-3.4.11.5
66709tyrosine arylamidase-
66709urease-3.5.1.5
66709alkaline phosphatase+3.1.3.1
66709alpha-glucosidase+3.2.1.20
66709arginine dihydrolase+3.5.3.6
66709beta-galactosidase+3.2.1.23
66709catalase+1.11.1.6
66709DNase+
66709leucine arylamidase+3.4.11.1
66709phenylalanine arylamidase+
66709pyrrolidonyl arylamidase+3.4.19.3
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase+3.4.19.3
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase+3.2.1.23
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
65105++-+/-+++++++-++/-+++-++-++---
65105++-+/-+++/-++/-+--+-+-+-++-++---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment culture
65105skin of a 64-year-old man with cellulitisTruroUnited KingdomGBREurope
66709skin of a 64-year-old man with cellulitisCornwallUnited KingdomGBREuropeThe skin of a 64-year-old man with cellulitis who attended a primary care setting in Cornwall, UK. Only a single colony type was observed in the wound culture. Overnight incubation at 37C on sheep blood agar.

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body-Site#Organ#Skin, Nail, Hair
#Infection#Inflammation

Sequence information

Genome sequences

  • @ref: 66792
  • description: Staphylococcus cornubiensis NW1
  • accession: GCA_900183575
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1986155

GC content

@refGC-contentmethod
6510537.3
6670937.3sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno63no
motileno90.756no
flagellatedno92.213no
gram-positiveyes85.462no
anaerobicno98.999no
aerobicyes87.218no
halophileyes85.712no
spore-formingno84.366no
thermophileno99.737yes
glucose-utilyes88.132no
glucose-fermentyes85.479yes

External links

@ref: 65105

culture collection no.: DSM 105366, NCTC 13950

straininfo link

  • @ref: 111230
  • straininfo: 396658

literature

  • topic: Phylogeny
  • Pubmed-ID: 30204583
  • title: Staphylococcus cornubiensis sp. nov., a member of the Staphylococcus intermedius Group (SIG).
  • authors: Murray AK, Lee J, Bendall R, Zhang L, Sunde M, Schau Slettemeas J, Gaze W, Page AJ, Vos M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002992
  • year: 2018
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Cellulitis/microbiology, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Male, Middle Aged, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Skin Diseases, Bacterial/*microbiology, Staphylococcal Infections/*microbiology, Staphylococcus/*classification/genetics/isolation & purification, Staphylococcus intermedius, United Kingdom
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65105Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105366Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105366)
66709Aimee K. Murray, John Lee, Richard Bendall, Lihong Zhang, Marianne Sunde, Jannice Schau Slettemeas, William Gaze, Andrew J. Page, Michiel VosStaphylococcus cornubiensis sp. nov., a member of the Staphylococcus intermedius Group (SIG)10.1099/ijsem.0.002992IJSEM 68: 3404-3408 201830204583
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
111230Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396658.1