Strain identifier

BacDive ID: 158427

Type strain: Yes

Species: Eubacterium maltosivorans

Strain Designation: YI

Strain history: A. J. M. Stams; Lab. of Microbiol., Wageningen Univ. & Res., Netherlands; YI.

NCBI tax ID(s): 2041044 (species)

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General

@ref: 65103

BacDive-ID: 158427

DSM-Number: 105863

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Eubacterium maltosivorans YI is an anaerobe, mesophilic bacterium that was isolated from Human fecal sample.

NCBI tax id

  • NCBI tax id: 2041044
  • Matching level: species

strain history

@refhistory
65103<- Y. Feng, Lab. Microbiology, Wageningen Univ., Netherlands; YI
67770A. J. M. Stams; Lab. of Microbiol., Wageningen Univ. & Res., Netherlands; YI.

doi: 10.13145/bacdive158427.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Eubacterium
  • species: Eubacterium maltosivorans
  • full scientific name: Eubacterium maltosivorans Feng et al. 2018

@ref: 65103

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Eubacterium

species: Eubacterium maltosivorans

full scientific name: Eubacterium maltosivorans Feng et al. 2018

strain designation: YI

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.981
69480100positive

Culture and growth conditions

culture medium

  • @ref: 65103
  • name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/339
  • composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
65103positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 99.359

spore formation

@refspore formationconfidence
69480no99.745
69481no96

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
65103Human fecal sampleWageningenNetherlandsNLDEurope
67770Fecal sample of a healthy adultNetherlandsNLDEurope

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_2312.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_53;97_56;98_1804;99_2312&stattab=map
  • Last taxonomy: Eubacterium maltosivorans subclade
  • 16S sequence: MH400075
  • Sequence Identity:
  • Total samples: 12960
  • soil counts: 159
  • aquatic counts: 925
  • animal counts: 11759
  • plant counts: 117

Sequence information

16S sequences

  • @ref: 65103
  • description: Eubacterium sp. strain YI 16S ribosomal RNA gene, partial sequence
  • accession: MH400075
  • length: 1287
  • database: ena
  • NCBI tax ID: 2041044

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Eubacterium maltosivorans YI2841251476completeimg2041044
67770Eubacterium maltosivorans YIGCA_002441855completencbi2041044

GC content

  • @ref: 67770
  • GC-content: 47.8
  • method: genome sequence analysis

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: no
  • confidence: 96
  • training_data: no

External links

@ref: 65103

culture collection no.: DSM 105863, JCM 32297

straininfo link

  • @ref: 111228
  • straininfo: 406215

literature

  • topic: Metabolism
  • Pubmed-ID: 30285910
  • title: Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism.
  • authors: Feng Y, Stams AJM, Sanchez-Andrea I, de Vos WM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003028
  • year: 2018
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65103Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105863Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105863)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111228Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406215.1