Strain identifier
BacDive ID: 158417
Type strain: 
Species: Ezakiella massiliensis
Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2951 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes
NCBI tax ID(s): 1852374 (species)
version 9.1 (current version)
General
@ref: 65093
BacDive-ID: 158417
DSM-Number: 103122
keywords: genome sequence, Bacteria, anaerobe
description: Ezakiella massiliensis DSM 103122 is an anaerobe bacterium that was isolated from vaginal sample from patient.
NCBI tax id
- NCBI tax id: 1852374
- Matching level: species
strain history
- @ref: 65093
- history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2951 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes
doi: 10.13145/bacdive158417.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptoniphilaceae
- genus: Ezakiella
- species: Ezakiella massiliensis
- full scientific name: Ezakiella massiliensis Diop et al. 2018
@ref: 65093
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridia, not assigned to order
family: Peptoniphilaceae
genus: Ezakiella
species: Ezakiella massiliensis
full scientific name: Ezakiella massiliensis Diop et al. 2018
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65093
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
- @ref: 65093
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 65093
- sample type: vaginal sample from patient
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body-Site | #Urogenital tract | #Vagina |
| #Host | #Human | #Female |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ezakiella massiliensis Marseille-P2951T | GCA_900120165 | complete | ncbi | 1852374 |
| 66792 | Ezakiella massiliensis Marseille-P2951 | 2751185561 | complete | img | 1852374 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 84.248 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 81.735 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.286 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 70.073 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 87.168 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 85.146 | no |
External links
@ref: 65093
culture collection no.: DSM 103122, Marseille-P2951
straininfo link
- @ref: 111220
- straininfo: 403082
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 27843546 | "Ezakiella massiliensis" sp. nov., a new bacterial species isolated from human female genital tract. | Diop K, Raoult D, Bretelle F, Fenollar F | New Microbes New Infect | 10.1016/j.nmni.2016.09.011 | 2016 | ||
| Phylogeny | 29188320 | Characterization of a New Ezakiella Isolated from the Human Vagina: Genome Sequence and Description of Ezakiella massiliensis sp. nov. | Diop K, Andrieu C, Michelle C, Armstrong N, Bittar F, Bretelle F, Fournier PE, Raoult D, Fenollar F | Curr Microbiol | 10.1007/s00284-017-1402-z | 2017 | Adult, Bacterial Typing Techniques, Fatty Acids/chemistry/metabolism, Female, Firmicutes/classification/genetics/*isolation & purification/metabolism, *Genome, Bacterial, Humans, Phylogeny, Vagina/*microbiology, Vaginosis, Bacterial/*microbiology, Young Adult | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65093 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103122 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103122) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 111220 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403082.1 |