General

@ref: 65075

BacDive-ID: 158399

DSM-Number: 104101

keywords: 16S sequence, Bacteria, mesophilic

description: Rathayibacter agropyri CA-4 is a mesophilic bacterium that was isolated from wheatgrass, Pascopyrum smithii.

NCBI tax id

• NCBI tax id: 1634927
• Matching level: species

strain history

• @ref: 65075
• history: <- B. Schroeder, University of Idaho, Moscow, ID, USA; CA-4 <-T. D. Murray,Washington State University

doi: 10.13145/bacdive158399.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Micrococcales
• family: Microbacteriaceae
• genus: Rathayibacter
• species: Rathayibacter agropyri
• full scientific name: Rathayibacter agropyri Schroeder et al. 2018

@ref: 65075

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Rathayibacter

species: Rathayibacter agropyri

full scientific name: Rathayibacter agropyri (non O'Gara 1916) Schroeder et al. 2018

strain designation: CA-4

type strain: yes

Culture and growth conditions

culture medium

• @ref: 65075
• name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
• growth: yes
• link: https://mediadive.dsmz.de/medium/92
• composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

• @ref: 65075
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 65075
• sample type: wheatgrass, Pascopyrum smithii
• geographic location: Near Cardwell, N 46.048, W 118.284
• country: USA
• origin.country: USA
• continent: North America

isolation source categories

• Cat1: #Host
• Cat2: #Plants
• Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

• @ref: 69479
• File name: preview.99_7179.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_461;97_795;98_920;99_7179&stattab=map
• Last taxonomy: Rathayibacter
• 16S sequence: KP118964
• Sequence Identity:
• Total samples: 8091
• soil counts: 2646
• aquatic counts: 712
• animal counts: 2197
• plant counts: 2536

Sequence information

16S sequences

• @ref: 65075
• description: Rathayibacter sp. CA4 16S ribosomal RNA gene, partial sequence
• accession: KP118964
• length: 1380
• database: ena
• NCBI tax ID: 1634927

External links

@ref: 65075

culture collection no.: DSM 104101, ATCC TSD-78

straininfo link

• @ref: 111203
• straininfo: 399791

literature

• topic: Phylogeny
• Pubmed-ID: 29557775
• title: Rathayibacter agropyri (non O'Gara 1916) comb. nov., nom. rev., isolated from western wheatgrass (Pascopyrum smithii).
• authors: Schroeder BK, Schneider WL, Luster DG, Sechler A, Murray TD
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.002708
• year: 2018
• mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Montana, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Washington
• topic2: Transcriptome

Reference