Strain identifier
BacDive ID: 158393
Type strain: 
Species: Kocuria uropygioeca
Strain Designation: 257
Strain history: <- M. S. Braun, Univ. Heidelberg, IPMB; 257
NCBI tax ID(s): 2055844 (species)
General
@ref: 65069
BacDive-ID: 158393
DSM-Number: 101741
keywords: 16S sequence, Bacteria, mesophilic
description: Kocuria uropygioeca 257 is a mesophilic bacterium that was isolated from preen gland of Dendrocopos major.
NCBI tax id
- NCBI tax id: 2055844
- Matching level: species
strain history
- @ref: 65069
- history: <- M. S. Braun, Univ. Heidelberg, IPMB; 257
doi: 10.13145/bacdive158393.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Kocuria
- species: Kocuria uropygioeca
- full scientific name: Kocuria uropygioeca Braun et al. 2018
@ref: 65069
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Kocuria
species: Kocuria uropygioeca
full scientific name: Kocuria uropygioeca Braun et al. 2018
strain designation: 257
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65069
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 65069
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65069
- sample type: preen gland of Dendrocopos major
- geographic location: Bad Homburg
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Birds |
| #Host Body-Site | #Organ |
Sequence information
16S sequences
- @ref: 65069
- description: Kocuria uropygioeca strain 257 16S ribosomal RNA gene, partial sequence
- accession: MF510150
- length: 1423
- database: ena
- NCBI tax ID: 2055844
GC content
- @ref: 65069
- GC-content: 60.8
External links
@ref: 65069
culture collection no.: DSM 101741, LMG 29266
straininfo link
- @ref: 111197
- straininfo: 403814
literature
- topic: Phylogeny
- Pubmed-ID: 29169691
- title: Kocuria uropygioeca sp. nov. and Kocuria uropygialis sp. nov., isolated from the preen glands of Great Spotted Woodpeckers (Dendrocopos major).
- authors: Braun MS, Wang E, Zimmermann S, Boutin S, Wink M
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2017.09.005
- year: 2017
- mesh: Animals, Bacterial Proteins/analysis, Bacterial Typing Techniques, Base Composition, Birds/*microbiology, Cluster Analysis, Cytosol/chemistry, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Exocrine Glands/*microbiology, Germany, Micrococcaceae/*classification/genetics/*isolation & purification, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65069 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101741 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101741) | |
| 111197 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403814.1 |