Strain identifier

BacDive ID: 158387

Type strain: Yes

Species: Bifidobacterium catulorum

Strain history: P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; MRM 8.19.

NCBI tax ID(s): 1630173 (species)

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General

@ref: 65063

BacDive-ID: 158387

DSM-Number: 103154

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Bifidobacterium catulorum DSM 103154 is a microaerophile, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from faeces of Callithrix jacchus.

NCBI tax id

  • NCBI tax id: 1630173
  • Matching level: species

strain history

@refhistory
65063<- P. Mattarelli, Dept. Vet. Public Health and Animal Pathology, Univ. Bologna, Italy; MRM 8.19 <- M. Modesto and S. Michelini
67770P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; MRM 8.19.

doi: 10.13145/bacdive158387.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium catulorum
  • full scientific name: Bifidobacterium catulorum Modesto et al. 2018

@ref: 65063

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium catulorum

full scientific name: Bifidobacterium catulorum Modesto et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 65332
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 65332
  • type of hemolysis: gamma
  • colony size: 1-2 mm
  • colony shape: circular
  • incubation period: 3 days
  • medium used: tryptone, phytone, yeast extract broth

multicellular morphology

  • @ref: 65332
  • forms multicellular complex: yes
  • medium name: tryptone, phytone, yeast extract broth
  • further description: cells forming a branched structure with a Y' shape at both sides

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65063BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)yeshttps://mediadive.dsmz.de/medium/58Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
65332tryptone, phytone, yeast extract brothyes

culture temp

@refgrowthtypetemperaturerange
65063positivegrowth37mesophilic
65332positivegrowth22-48
65332nogrowth20psychrophilic
65332positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
65332positivegrowth4-8acidophile
65332positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65332microaerophile
65332aerobe

observation

  • @ref: 65332
  • observation: cells are F6PPK-positive

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6533227613amygdalin-builds acid from
6533218305arbutin-builds acid from
6533217057cellobiose-builds acid from
6533215963ribitol-builds acid from
6533217108D-arabinose-builds acid from
6533218333D-arabitol+builds acid from
6533215824D-fructose+builds acid from
6533228847D-fucose-builds acid from
6533212936D-galactose-builds acid from
6533217634D-glucose+builds acid from
6533262318D-lyxose-builds acid from
6533216899D-mannitol+builds acid from
6533216024D-mannose+builds acid from
6533216988D-ribose+builds acid from
6533217924D-sorbitol+builds acid from
6533216443D-tagatose-builds acid from
6533265327D-xylose+builds acid from
6533216813galactitol-builds acid from
6533217113erythritol-builds acid from
653324853esculin+hydrolysis
65332esculin ferric citrate-builds acid from
653325291gelatin-hydrolysis
6533228066gentiobiose-builds acid from
6533217754glycerol-builds acid from
6533228087glycogen-builds acid from
6533217268myo-inositol-builds acid from
6533215443inulin-builds acid from
6533230849L-arabinose+builds acid from
6533218403L-arabitol-builds acid from
6533218287L-fucose-builds acid from
6533262345L-rhamnose-builds acid from
6533217266L-sorbose-builds acid from
6533265328L-xylose-builds acid from
6533217716lactose+builds acid from
6533217306maltose+builds acid from
653326731melezitose+builds acid from
6533228053melibiose-builds acid from
65332320061methyl alpha-D-glucopyranoside+builds acid from
6533243943methyl alpha-D-mannoside-builds acid from
6533274863methyl beta-D-xylopyranoside+builds acid from
65332506227N-acetylglucosamine-builds acid from
6533217632nitrate-reduction
65332potassium 2-dehydro-D-gluconate-builds acid from
65332potassium 5-dehydro-D-gluconate-builds acid from
6533232032potassium gluconate-builds acid from
6533216634raffinose+builds acid from
6533217814salicin-builds acid from
6533228017starch-builds acid from
6533217992sucrose+builds acid from
6533227082trehalose+builds acid from
6533232528turanose+builds acid from
6533217151xylitol-builds acid from

enzymes

@refvalueactivityec
65332catalase-1.11.1.6
65332cytochrome oxidase-1.9.3.1
65332alpha-galactosidase+3.2.1.22
65332beta-galactosidase+3.2.1.23
65332alpha-glucosidase+3.2.1.20
65332beta-glucosidase+3.2.1.21
65332alkaline phosphatase+3.1.3.1
65332L-arginine arylamidase+
65332proline-arylamidase+3.4.11.5
65332phenylalanine arylamidase+
65332leucine arylamidase+3.4.11.1
65332tyrosine arylamidase+
65332leucyl glycin arylamidase+3.4.11.1
65332glycin arylamidase+
65332histidine arylamidase+
65332serine arylamidase+
65332urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
65063faeces of Callithrix jacchusVeronaItalyITAEurope
65332faeces of a baby subject of the common marmoset (Callithrix jacchus)
67770Feces of the baby common marmoset (Callithrix jacchus)Callithrix jacchus

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Primates
#Host#Juvenile

taxonmaps

  • @ref: 69479
  • File name: preview.99_160160.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_60312;97_78078;98_105431;99_160160&stattab=map
  • Last taxonomy: Bifidobacterium catulorum subclade
  • 16S sequence: KP718959
  • Sequence Identity:
  • Total samples: 979
  • soil counts: 10
  • aquatic counts: 11
  • animal counts: 956
  • plant counts: 2

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
65063Bifidobacterium catulorum strain MRM 8.19 16S ribosomal RNA gene, partial sequenceKP718959.11498ena1630173
67770Bifidobacterium catulorum strain MRM 8.19 16S ribosomal RNA gene, partial sequenceKP7189591498ena1630173

GC content

@refGC-contentmethod
6506363.7
6533263.7high performance liquid chromatography (HPLC)

External links

@ref: 65063

culture collection no.: DSM 103154, MRM 8.19, JCM 31794

straininfo link

  • @ref: 111191
  • straininfo: 403650

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29300153Bifidobacterium catulorum sp. nov., a novel taxon from the faeces of the baby common marmoset (Callithrix jacchus).Modesto M, Michelini S, Oki K, Biavati B, Watanabe K, Mattarelli PInt J Syst Evol Microbiol10.1099/ijsem.0.0025452018Aldehyde-Lyases/genetics, Animals, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification/genetics/isolation & purification, Callithrix/*microbiology, Chaperonin 60/genetics, DNA, Bacterial/genetics, Feces/microbiology, Genes, Bacterial, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny30150092Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator).Modesto M, Puglisi E, Bonetti A, Michelini S, Spiezio C, Sandri C, Sgorbati B, Morelli L, Mattarelli PSyst Appl Microbiol10.1016/j.syapm.2018.07.0052018Aldehyde-Lyases/genetics, Animals, Animals, Zoo/microbiology, Bacterial Typing Techniques, Bifidobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Feces/*microbiology, Italy, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saguinus/*microbiology, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65063Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103154Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103154)
65332Monica Modesto, Samanta Michelini, Kaihei Oki, Bruno Biavati, Koichi Watanabe, Paola MattarelliBifidobacterium catulorum sp. nov., a novel taxon from the faeces of the baby common marmoset (Callithrix jacchus)10.1099/ijsem.0.002545IJSEM 68: 575-581 201829300153
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111191Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403650.1