Strain identifier

BacDive ID: 158368

Type strain: Yes

Species: Glycomyces sediminimaris

Strain Designation: MH2460

Strain history: <- J. Wink, HZI, Microbial Strain Collection, Braunschweig, Germany; UTMC 2460 <- F. Mohammadipanah and S. Heydarian, University of Teheran, Department of Microbiology, School of Biology College of Science; UTMC 2460

NCBI tax ID(s): 1761452 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 8.1 (current version)

General

@ref: 65044

BacDive-ID: 158368

DSM-Number: 103727

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, pigmented

description: Glycomyces sediminimaris MH2460 is an aerobe, spore-forming, mesophilic bacterium that builds a substrate mycelium and has a light brownish pigmentation.

NCBI tax id

  • NCBI tax id: 1761452
  • Matching level: species

strain history

  • @ref: 65044
  • history: <- J. Wink, HZI, Microbial Strain Collection, Braunschweig, Germany; UTMC 2460 <- F. Mohammadipanah and S. Heydarian, University of Teheran, Department of Microbiology, School of Biology College of Science; UTMC 2460

doi: 10.13145/bacdive158368.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Glycomycetales
  • family: Glycomycetaceae
  • genus: Glycomyces
  • species: Glycomyces sediminimaris
  • full scientific name: Glycomyces sediminimaris Mohammadipanah et al. 2018

@ref: 65044

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Glycomycetaceae

genus: Glycomyces

species: Glycomyces sediminimaris

full scientific name: Glycomyces sediminimaris Mohammadipanah et al. 2018

strain designation: MH2460

type strain: yes

Morphology

cell morphology

  • @ref: 66599
  • gram stain: positive

colony morphology

  • @ref: 66599
  • colony color: creamy to light brown
  • medium used: ISP media

multicellular morphology

@refforms multicellular complexcomplex namecomplex color
66599yessubstrate myceliumcreamy to light brown
66599yesaerial myceliumcreamy to light brown

pigmentation

  • @ref: 66599
  • production: yes
  • color: light brownish

multimedia

  • @ref: 65044
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103727.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65044GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
65044ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
65044STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
66599ISP 2yes
66599ISP 3no
66599ISP 4yes
66599ISP 5yes
66599ISP 6yes
66599ISP 7yes
66599ISP mediayes

culture temp

@refgrowthtypetemperaturerange
65044positivegrowth28mesophilic
66599positiveoptimum25-35mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 66599
  • oxygen tolerance: aerobe

spore formation

  • @ref: 66599
  • spore description: rod-shaped
  • spore formation: yes

halophily

  • @ref: 66599
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 2.5-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6659928017starch-carbon source
6659916634raffinose+carbon source
6659917057cellobiose+carbon source
6659917268myo-inositol+carbon source
6659917306maltose+carbon source
6659917716lactose+carbon source
6659926546rhamnose+carbon source
6659928260galactose+carbon source
6659928757fructose+carbon source
6659930623oxalate+carbon source
6659930911sorbitol+carbon source
6659932954sodium acetate+carbon source
6659953258sodium citrate+carbon source
6659963675sodium succinate+carbon source
6659928017starch-hydrolysis
665994853esculin+hydrolysis
66599casein+hydrolysis
6659915356cysteine+nitrogen source
6659918186tyrosine+nitrogen source
6659927570histidine+nitrogen source
6659929016arginine+nitrogen source
6659917632nitrate+reduction

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    66599C16:03
    66599C15:06
    66599C14:01.6
    66599C16:0 iso11.9
    66599C15:0 iso12.9
    66599C17:0 anteiso17.3
    66599C16:1 iso G2.4
    66599C14:0 iso2.7
    66599C15:0 anteiso34.6
    66599C17:1 anteiso A4.9
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA
  • incubation temperature: 28
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • method/protocol: Kämpfer & Kroppenstedt 1996
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
65044marine sedimentBushehr Province, Persian Gulf, Rostami seaport, Boshehr (28° 58' N, 50° 50' E)IranIRNAsia28.966750.8333
66599marine sedimentsRostami Seaport, Bushehr ProvinceIranIRNAsiamodified humic acid-vitamin agar0.1 g/l fish meal, 0.02 g/l CaCO3, 0.5 g/l Na2HPO4, 0.5 g/l MgSO4 . 7H2O, 1.7 g/l KCl, 0.01 g/l FeSO4 . 7H2O, 1 ml vitamin solution 14 g in 1 l artificial seawater14 days28

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_78352.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_344;96_1445;97_17202;98_21367;99_78352&stattab=map
  • Last taxonomy: Glycomyces sediminimaris subclade
  • 16S sequence: KU174196
  • Sequence Identity:
  • Total samples: 1035
  • soil counts: 475
  • aquatic counts: 61
  • animal counts: 387
  • plant counts: 112

Sequence information

16S sequences

  • @ref: 65044
  • description: Glycomyces sp. UTMC 2460 16S ribosomal RNA gene, partial sequence
  • accession: KU174196
  • length: 1502
  • database: ena
  • NCBI tax ID: 1761452

GC content

  • @ref: 66599
  • GC-content: 70.20
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65044

culture collection no.: DSM 103727, NCCB 100631, UTMC 2460

straininfo link

  • @ref: 111173
  • straininfo: 399363

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29869980Glycomyces sediminimaris sp. nov., a new species of actinobacteria isolated from marine sediment.Mohammadipanah F, Atasayar E, Heidarian S, Wink JInt J Syst Evol Microbiol10.1099/ijsem.0.0028472018Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Iran, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/classification, Vitamin K 2/chemistryTranscriptome
30687240Anti-microfouling Activity of Glycomyces sediminimaris UTMC 2460 on Dominant Fouling Bacteria of Iran Marine Habitats.Heidarian S, Mohammadipanah F, Maghsoudlou A, Dashti Y, Challis GLFront Microbiol10.3389/fmicb.2018.031482019

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65044Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103727Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103727)
66599Fatemeh Mohammadipanah, Ewelina Atasayar, Sheida Heidarian and Joachim WinkGlycomyces sediminimaris sp. nov., a new species of actinobacteria isolated from marine sediment10.1099/ijsem.0.002847IJSEM 68: 2357-2363 201829869980
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111173Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399363.1