Strain identifier
BacDive ID: 158224
Type strain: 
Species: Methylomonas sp.
Strain Designation: LW13
Strain history: <- A. Vorobev, Univ. of Washington, Seattle, USA; LW13 <- M. G. Kalyuzhnaya <- A. J. Auman
NCBI tax ID(s): 418 (species)
version 8.1 (current version)
General
@ref: 64844
BacDive-ID: 158224
DSM-Number: 24493
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Methylomonas sp. LW13 is a mesophilic bacterium that was isolated from Sediment.
NCBI tax id
- NCBI tax id: 418
- Matching level: species
strain history
- @ref: 64844
- history: <- A. Vorobev, Univ. of Washington, Seattle, USA; LW13 <- M. G. Kalyuzhnaya <- A. J. Auman
doi: 10.13145/bacdive158224.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Methylococcales
- family: Methylococcaceae
- genus: Methylomonas
- species: Methylomonas sp.
- full scientific name: Methylomonas (ex Leadbetter 1974) Whittenbury and Krieg 1984
@ref: 64844
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Methylococcales
family: Methylococcaceae
genus: Methylomonas
species: Methylomonas sp.
full scientific name: Methylomonas sp.
strain designation: LW13
type strain: no
Culture and growth conditions
culture medium
- @ref: 64844
- name: MINERAL MEDIUM (DSMZ Medium 1007)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1007
- composition: Name: MINERAL MEDIUM (DSMZ Medium 1007) Composition: KNO3 0.25 g/l KH2PO4 0.1 g/l MgSO4 x 7 H2O 0.05 g/l CaCl2 x 2 H2O 0.01 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l CoCl2 x 6 H2O 0.0002 g/l CuCl2 x 5 H2O 0.0001 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Distilled water
culture temp
- @ref: 64844
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64844
- sample type: Sediment
- geographic location: Lake Washington
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_1418.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_194;96_820;97_954;98_1121;99_1418&stattab=map
- Last taxonomy: Methylomonas
- 16S sequence: AF150792
- Sequence Identity:
- Total samples: 11126
- soil counts: 1556
- aquatic counts: 7580
- animal counts: 1076
- plant counts: 914
Sequence information
16S sequences
- @ref: 64844
- description: Methylomonas sp. LW13 16S ribosomal RNA gene, partial sequence
- accession: AF150792
- length: 1498
- database: ena
- NCBI tax ID: 107637
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methylomonas sp. LW13 | GCA_016865255 | complete | ncbi | 107637 |
| 66792 | Methylomonas sp. LW13 | 107637.3 | wgs | patric | 107637 |
| 66792 | Methylomonas sp. LW13 | 2561511042 | draft | img | 107637 |
| 66792 | Methylomonas sp. LW13 | 2923715482 | complete | img | 107637 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 61.04 | no |
| gram-positive | no | 98.965 | no |
| anaerobic | no | 95.777 | no |
| aerobic | yes | 77.696 | no |
| halophile | no | 93.11 | no |
| spore-forming | no | 91.381 | no |
| thermophile | no | 99.366 | yes |
| glucose-util | yes | 72.939 | no |
| motile | yes | 81.871 | no |
| glucose-ferment | no | 81.925 | no |
External links
@ref: 64844
culture collection no.: DSM 24493
straininfo link
- @ref: 111047
- straininfo: 400878
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64844 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24493 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24493) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111047 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400878.1 |