Strain identifier
BacDive ID: 158209
Type strain: 
Species: Capnocytophaga canis
Strain Designation: HP40001
Strain history: M. Suzuki; Dept. of Vet. Sci., Natl. Inst. of Infect. Dis., Japan; HP40001.
NCBI tax ID(s): 1848903 (species)
version 8.1 (current version)
General
@ref: 64808
BacDive-ID: 158209
DSM-Number: 103082
keywords: 16S sequence, Bacteria, mesophilic
description: Capnocytophaga canis HP40001 is a mesophilic bacterium that was isolated from human blood, clinical sample.
NCBI tax id
- NCBI tax id: 1848903
- Matching level: species
strain history
| @ref | history |
|---|---|
| 64808 | <- M. Suzuki, National Institute of Infectious Diseases <- Y. Haga; HP40001 |
| 67770 | M. Suzuki; Dept. of Vet. Sci., Natl. Inst. of Infect. Dis., Japan; HP40001. |
doi: 10.13145/bacdive158209.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Capnocytophaga
- species: Capnocytophaga canis
- full scientific name: Capnocytophaga canis Renzi et al. 2016
@ref: 64808
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Capnocytophaga
species: Capnocytophaga canis
full scientific name: Capnocytophaga canis Renzi et al. 2016
strain designation: HP40001
type strain: no
Culture and growth conditions
culture medium
- @ref: 64808
- name: HEART INFUSION BLOOD AGAR (DSMZ Medium 1609)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1609
- composition: Name: HEART INFUSION BLOOD AGAR (DSMZ Medium 1609) Composition: Defibrinated Blood 75.0 g/l Bacto Heart Infusion Broth 25.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 64808 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 64808 | human blood, clinical sample | Fukuoka | Japan | JPN | Asia | 33.8572 | 130.765 |
| 67770 | Blood cultures of hospitalized patients with sepsis in Japan |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Fluids | #Blood |
| #Host | #Human | |
| #Infection | #Patient |
taxonmaps
- @ref: 69479
- File name: preview.99_1531.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15818;96_589;97_689;98_1208;99_1531&stattab=map
- Last taxonomy: Capnocytophaga canis subclade
- 16S sequence: LC100036
- Sequence Identity:
- Total samples: 1034
- soil counts: 1
- aquatic counts: 8
- animal counts: 1023
- plant counts: 2
Safety information
risk assessment
- @ref: 64808
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64808
- description: Capnocytophaga canis 16S ribosomal RNA, partial sequence
- accession: LC100036
- length: 1440
- database: ena
- NCBI tax ID: 1848903
GC content
- @ref: 67770
- GC-content: 34.9-35.3
External links
@ref: 64808
culture collection no.: DSM 103082, JCM 31246
straininfo link
- @ref: 111038
- straininfo: 403459
literature
- topic: Phylogeny
- Pubmed-ID: 30118139
- title: Characterization of three strains of Capnocytophaga canis isolated from patients with sepsis.
- authors: Suzuki M, Imaoka K, Haga Y, Mohri M, Nogami A, Shimojima Y, Irie Y, Sugimura S, Morikawa S
- journal: Microbiol Immunol
- DOI: 10.1111/1348-0421.12642
- year: 2018
- mesh: Aged, Aged, 80 and over, Animals, Bacterial Typing Techniques, Base Composition, Benzoquinones/analysis, Bites and Stings/microbiology, Capnocytophaga/*classification/genetics/*isolation & purification/*pathogenicity, Cat Diseases/microbiology, Cats, DNA Gyrase/genetics, DNA, Bacterial/isolation & purification, Dog Diseases/microbiology, Dogs, Female, Genes, Bacterial/genetics, Gram-Negative Bacterial Infections/*microbiology, Humans, Japan, Male, Middle Aged, Multilocus Sequence Typing, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sepsis/*microbiology, Sequence Analysis, DNA, Species Specificity, Whole Genome Sequencing, Zoonoses/microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 64808 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103082 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103082) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 111038 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403459.1 |