Strain identifier
BacDive ID: 158183
Type strain: 
Species: Chlamydia avium
Strain Designation: 10DC88, DC88
Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 10DC88
NCBI tax ID(s): 1457141 (species)
version 8.1 (current version)
General
@ref: 64779
BacDive-ID: 158183
DSM-Number: 27005
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Chlamydia avium 10DC88 is a mesophilic bacterium that was isolated from spleen tissue from a perished psittacine bird from a breeder flock.
NCBI tax id
- NCBI tax id: 1457141
- Matching level: species
strain history
- @ref: 64779
- history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 10DC88
doi: 10.13145/bacdive158183.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydia
- species: Chlamydia avium
- full scientific name: Chlamydia avium Sachse et al. 2015
@ref: 64779
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia avium
full scientific name: Chlamydia avium Sachse et al. 2015
strain designation: 10DC88, DC88
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64779
- name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1193
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium
culture temp
- @ref: 64779
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64779
- sample type: spleen tissue from a perished psittacine bird (genus Polytelis) from a breeder flock
- geographic location: Arnsberg
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Organ | #Spleen |
| #Host | #Birds |
taxonmaps
- @ref: 69479
- File name: preview.99_5345.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_62;96_169;97_182;98_2200;99_5345&stattab=map
- Last taxonomy: Chlamydia avium
- 16S sequence: KF366255
- Sequence Identity:
- Total samples: 69
- soil counts: 8
- aquatic counts: 13
- animal counts: 47
- plant counts: 1
Sequence information
16S sequences
- @ref: 64779
- description: Chlamydia avium 10DC88 16S ribosomal RNA gene, partial sequence
- accession: KF366255
- length: 1426
- database: ena
- NCBI tax ID: 1229831
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydia avium 10DC88 | GCA_000583875 | complete | ncbi | 1229831 |
| 66792 | Chlamydia avium 10DC88 | 1229831.4 | plasmid | patric | 1229831 |
GC content
- @ref: 64779
- GC-content: 36.9
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 65.783 | no |
| flagellated | no | 96.089 | no |
| gram-positive | no | 96.949 | no |
| anaerobic | no | 68.477 | no |
| halophile | yes | 55.14 | no |
| spore-forming | no | 97.467 | no |
| glucose-util | yes | 75.725 | no |
| aerobic | no | 91.422 | no |
| thermophile | no | 82.078 | yes |
| glucose-ferment | no | 50.771 | no |
External links
@ref: 64779
culture collection no.: DSM 27005, CSUR P3508
straininfo link
- @ref: 111014
- straininfo: 408307
literature
- topic: Phylogeny
- Pubmed-ID: 24461712
- title: Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov.
- authors: Sachse K, Laroucau K, Riege K, Wehner S, Dilcher M, Creasy HH, Weidmann M, Myers G, Vorimore F, Vicari N, Magnino S, Liebler-Tenorio E, Ruettger A, Bavoil PM, Hufert FT, Rossello-Mora R, Marz M
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2013.12.004
- year: 2014
- mesh: Animals, Bacterial Outer Membrane Proteins/genetics, Birds/*microbiology, Cells, Cultured, Chlamydia/*classification/genetics/*isolation & purification, Chlorocebus aethiops, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, Poultry/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64779 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27005 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27005) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111014 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408307.1 |