Strain identifier
BacDive ID: 158175
Type strain: 
Species: Granulosicoccus undariae
Strain Designation: W-BA3
Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.
NCBI tax ID(s): 1524256 (species)
version 8.1 (current version)
General
@ref: 64768
BacDive-ID: 158175
DSM-Number: 107188
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Granulosicoccus undariae W-BA3 is an aerobe, mesophilic bacterium that was isolated from brown algae reservoir.
NCBI tax id
- NCBI tax id: 1524256
- Matching level: species
strain history
| @ref | history |
|---|---|
| 64768 | <- Y. Muramatsu, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan <- J.-H. Yoon, Department of Food Science and Biotechnology, Sungyunkwan University, Suwon, South Korea |
| 67771 | <- Jung-Hoon Yoon, Sungkyunkwan Univ. |
doi: 10.13145/bacdive158175.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Granulosicoccaceae
- genus: Granulosicoccus
- species: Granulosicoccus undariae
- full scientific name: Granulosicoccus undariae Park et al. 2015
@ref: 64768
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Granulosicoccaceae
genus: Granulosicoccus
species: Granulosicoccus undariae
full scientific name: Granulosicoccus undariae Park et al. 2015
strain designation: W-BA3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64768
- name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514f
- composition: Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 64768 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 64768 | brown algae reservoir | Wando Island | Republic of Korea | KOR | Asia |
| 67771 | From sea mustard storeroom | Wando | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Algae
- Cat3: #Brown Algae
taxonmaps
- @ref: 69479
- File name: preview.99_36131.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1048;96_4730;97_5737;98_7205;99_36131&stattab=map
- Last taxonomy: Granulosicoccus
- 16S sequence: KJ855315
- Sequence Identity:
- Total samples: 84
- aquatic counts: 78
- animal counts: 2
- plant counts: 4
Safety information
risk assessment
- @ref: 64768
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64768
- description: Granulosicoccus undariae strain W-BA3 16S ribosomal RNA gene, partial sequence
- accession: KJ855315
- length: 1467
- database: ena
- NCBI tax ID: 1524256
External links
@ref: 64768
culture collection no.: DSM 107188, KCTC 42134, NBRC 110411
straininfo link
- @ref: 111006
- straininfo: 405081
literature
- topic: Phylogeny
- Pubmed-ID: 25113386
- title: Granulosicoccus undariae sp. nov., a member of the family Granulosicoccaceae isolated from a brown algae reservoir and emended description of the genus Granulosicoccus.
- authors: Park S, Jung YT, Won SM, Park JM, Yoon JH
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-014-0254-9
- year: 2014
- mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phaeophyta/growth & development, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64768 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107188 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107188) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111006 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405081.1 |