Archive BacDiveID:10.13145/bacdive158158.20230509.8.1

Strain identifier

BacDive ID: 158158

Type strain:

Species: Nonomuraea thailandensis

Strain Designation: KC-061

Strain history: <- S Tanasupawat, Chulalonkorn Univ., Thailand

NCBI tax ID(s): 1188745 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 64746

BacDive-ID: 158158

DSM-Number: 46694

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Nonomuraea thailandensis KC-061 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

NCBI tax id: 1188745
Matching level: species

strain history

@ref	history
64746	<- JCM; JCM 18408 <- S. Tanasupawat; KC-061
67770	S. Tanasupawat; Chulalongkorn Univ., Thailand; KC-061.
67771	<- S Tanasupawat, Chulalonkorn Univ., Thailand

doi: 10.13145/bacdive158158.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Streptosporangiales
family: Streptosporangiaceae
genus: Nonomuraea
species: Nonomuraea thailandensis
full scientific name: Nonomuraea thailandensis Sripreechasak et al. 2013

@ref: 64746

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea thailandensis

full scientific name: Nonomuraea thailandensis Sripreechasak et al. 2013

strain designation: KC-061

type strain: yes

Morphology

cell morphology

@ref: 67771
gram stain: positive

multimedia

@ref: 64746
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46694.jpg
caption: Medium 553 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
64746	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
64746	GPHF-MEDIUM (DSMZ Medium 553)	yes	https://mediadive.dsmz.de/medium/553	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
64746	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
64746	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	28	mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 67771
oxygen tolerance: aerobe

observation

@ref: 67770
observation: quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	latitude	longitude
64746	soil	Surat Thani province, Angthong Islands National Park (9° 38' N, 99° 40' 13'' E)	Thailand	THA	Asia	9.6333	99.6703
67770	Soil in Angthong Islands National Park	Surat Thani	Thailand	THA	Asia
67771	From soil	Surat Thani Province	Thailand	THA	Asia

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Soil

Safety information

risk assessment

@ref: 64746
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
67770	Nonomuraea thailandensis gene for 16S rRNA, partial sequence, strain: KC-061	AB720113	1489	ena	1188745
64746		AB7201133		ena

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Nonomuraea thailandensis DSM 46694	2872728642	draft	img	1188745
66792	Nonomuraea thailandensis DSM 46694	GCA_024172165	contig	ncbi	1188745

GC content

@ref: 64746
GC-content: 72.4
method: high performance liquid chromatography (HPLC)

External links

@ref: 64746

culture collection no.: DSM 46694, JCM 18408, KCTC 29074, PCU 327

straininfo link

@ref: 110990
straininfo: 399215

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	23188380	Nonomuraea thailandensis sp. nov. isolated from Thai soil.	Sripreechasak P, Tanasupawat S, Suwanborirux K, Inahashi Y, Matsumoto A, Shiomi K, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2012.96	2012	Actinomycetales/classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, rRNA, Phylogeny, Sequence Analysis, DNA, *Soil Microbiology, Thailand	Transcriptome
Phylogeny	25634947	Nonomuraea syzygii sp. nov., an endophytic actinomycete isolated from the roots of a jambolan plum tree (Syzygium cumini L. Skeels).	Rachniyom H, Matsumoto A, Indananda C, Duangmal K, Takahashi Y, Thamchaipenet A	Int J Syst Evol Microbiol	10.1099/ijs.0.000085	2015	Actinomycetales/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Syzygium/microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry	Genetics
Phylogeny	27561257	Nonomuraea purpurea sp. nov., an actinomycete isolated from mangrove sediment.	Suksaard P, Mingma R, Srisuk N, Matsumoto A, Takahashi Y, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001457	2016	Actinobacteria/classification/genetics/isolation & purification, Avicennia/microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *Wetlands	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
64746	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-46694	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46694)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
67771	Curators of the KCTC		https://kctc.kribb.re.kr/En/Kctc
110990	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID399215.1