Strain identifier
BacDive ID: 158111
Type strain:
Species: Alistipes onderdonkii subsp. onderdonkii
Strain Designation: H6_8
Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; H6_8
NCBI tax ID(s): 2706586 (subspecies)
General
@ref: 64690
BacDive-ID: 158111
DSM-Number: 108265
keywords: Bacteria, mesophilic, human pathogen
description: Alistipes onderdonkii subsp. onderdonkii H6_8 is a mesophilic human pathogen that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 2706586
- Matching level: subspecies
strain history
- @ref: 64690
- history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; H6_8
doi: 10.13145/bacdive158111.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Rikenellaceae
- genus: Alistipes
- species: Alistipes onderdonkii subsp. onderdonkii
- full scientific name: Alistipes onderdonkii subsp. onderdonkii (Song et al. 2006) Sakamoto et al. 2020
@ref: 64690
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Rikenellaceae
genus: Alistipes
species: Alistipes onderdonkii subsp. onderdonkii
full scientific name: Alistipes onderdonkii subsp. onderdonkii (Song et al. 2006) Sakamoto et al. 2020
strain designation: H6_8
type strain: no
Culture and growth conditions
culture medium
- @ref: 64690
- name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
- growth: yes
- link: https://mediadive.dsmz.de/medium/78
- composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
culture temp
- @ref: 64690
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64690
- sample type: human faeces
- geographic location: Cambridgeshire
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 64690
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 64690
culture collection no.: DSM 108265
straininfo link
- @ref: 110953
- straininfo: 399033
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
64690 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108265 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108265) | |
110953 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399033.1 |