Strain identifier

BacDive ID: 157996

Type strain: Yes

Species: Mesorhizobium ciceri

Strain Designation: UPM-Ca7

Strain history: CIP <- 1994, S.M. Nour, CNRS, Univ. Lyon I, France: strain UPM-Ca7 <- T.R. Argüeso, Univ. Madrid, Spain

NCBI tax ID(s): 39645 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 8.1 (current version)

General

@ref: 64569

BacDive-ID: 157996

DSM-Number: 106840

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Mesorhizobium ciceri UPM-Ca7 is a mesophilic, Gram-negative, motile bacterium of the family Phyllobacteriaceae.

NCBI tax id

  • NCBI tax id: 39645
  • Matching level: species

strain history

@refhistory
64569<- LMG; LMG 14989 <- S. Nour, Université Claude Bernard, Lyon, France <- T. Ruiz-Argieso, Universidad Politechnica Madrid, Spain
67770IAM 15103 <-- LMG 14989 <-- S. M. Nour <-- T. Ruiz-Argueso UPM-Ca7.
118276CIP <- 1994, S.M. Nour, CNRS, Univ. Lyon I, France: strain UPM-Ca7 <- T.R. Argüeso, Univ. Madrid, Spain

doi: 10.13145/bacdive157996.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium ciceri
  • full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997

  • synonyms

    • @ref: 20215
    • synonym: Rhizobium ciceri

@ref: 64569

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium ciceri

full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997

strain designation: UPM-Ca7

type strain: yes

Morphology

cell morphology

  • @ref: 118276
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64569R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
118276CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperaturerange
64569positivegrowth28mesophilic
67770positivegrowth28mesophilic
118276positivegrowth22-30
118276nogrowth10psychrophilic
118276nogrowth37mesophilic
118276nogrowth41thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1182764853esculin-hydrolysis
11827617632nitrate-reduction
11827616301nitrite-reduction

metabolite production

  • @ref: 118276
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
118276oxidase+
118276beta-galactosidase+3.2.1.23
118276alcohol dehydrogenase-1.1.1.1
118276gelatinase-
118276catalase-1.11.1.6
118276lysine decarboxylase-4.1.1.18
118276ornithine decarboxylase-4.1.1.17
118276urease-3.5.1.5

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118276+++++-++--++--+++-++++-++-++--+++----+-++-+-----++---+--+--++---+------+-+-+----+-----+----+-+-----

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typehost species
64569SpainESPEurope
67770Nodules of Cicer arietinum LCicer arietinum
118276SpainESPEuropeFood, Nodulated chickpeas

taxonmaps

  • @ref: 69479
  • File name: preview.99_809.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: AB681164
  • Sequence Identity:
  • Total samples: 30688
  • soil counts: 18576
  • aquatic counts: 5652
  • animal counts: 4689
  • plant counts: 1771

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
645691Risk group (German classification)
1182761Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Mesorhizobium ciceri gene for 16S rRNA, partial sequence, strain: NBRC 100389
  • accession: AB681164
  • length: 1410
  • database: ena
  • NCBI tax ID: 39645

External links

@ref: 64569

culture collection no.: DSM 106840, LMG 14989, ATCC 51585, CIP 104229, JCM 21564, NBRC 100389, ATCC 700744, DSM 11540, HAMBI 1750, IAM 15103, LMG 17150

straininfo link

  • @ref: 110844
  • straininfo: 92537

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7520739Rhizobium ciceri sp. nov., consisting of strains that nodulate chickpeas (Cicer arietinum L.).Nour SM, Fernandez MP, Normand P, Cleyet-Marel JCInt J Syst Bacteriol10.1099/00207713-44-3-5111994Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fabaceae/*microbiology, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, *Plants, Medicinal, Polymorphism, Restriction Fragment Length, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/metabolism, Sequence Homology, Nucleic Acid, Species SpecificityGenetics
Phylogeny7547282Genomic heterogeneity of strains nodulating chickpeas (Cicer arietinum L.) and description of Rhizobium mediterraneum sp. nov.Nour SM, Cleyet-Marel JC, Normand P, Fernandez MPInt J Syst Bacteriol10.1099/00207713-45-4-6401995Base Sequence, DNA, Bacterial/analysis, DNA, Ribosomal/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peas/*microbiology, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/geneticsGenetics
Phylogeny12545212Lipopolysaccharides from Mesorhizobium huakuii and Mesorhizobium ciceri: chemical and immunological comparative data.Choma AActa Biochim Pol02490410432002Alphaproteobacteria/*chemistry/*classification/immunology, Animals, Blotting, Western, Electrophoresis, Polyacrylamide Gel, Immune Sera/immunology, Lipopolysaccharides/*chemistry/*immunology, Rabbits, Species SpecificityEnzymology
Metabolism12633685The polar lipid composition of Mesorhizobium ciceri.Choma A, Komaniecka IBiochim Biophys Acta10.1016/s1388-1981(03)00005-22003Chromatography, Thin Layer, Fatty Acids/analysis, Lipids/analysis/*chemistry, Mass Spectrometry, Phospholipids/chemistry, Rhizobium/*chemistry/metabolism
Phylogeny17473255Mesorhizobium ciceri biovar biserrulae, a novel biovar nodulating the pasture legume Biserrula pelecinus L.Nandasena KG, O'Hara GW, Tiwari RP, Willlems A, Howieson JGInt J Syst Evol Microbiol10.1099/ijs.0.64891-02007Acyltransferases/genetics, Alphaproteobacteria/*classification/genetics/physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Drug Resistance, Bacterial, Fabaceae/*microbiology/physiology, Fatty Acids/analysis, Genes, rRNA, Genomic Islands/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, Phylogeny, Plasmids/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Symbiosis/geneticsGenetics
Phylogeny19643905Mesorhizobium shangrilense sp. nov., isolated from root nodules of Caragana species.Lu YL, Chen WF, Wang ET, Han LL, Zhang XX, Chen WX, Han SZInt J Syst Evol Microbiol10.1099/ijs.0.007393-02009Alphaproteobacteria/*classification/genetics/*isolation & purification, Caragana/*microbiology, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiologyGenetics
Phylogeny22846039ACC deaminase genes are conserved among Mesorhizobium species able to nodulate the same host plant.Nascimento FX, Brigido C, Glick BR, Oliveira SFEMS Microbiol Lett10.1111/j.1574-6968.2012.02648.x2012Bacterial Proteins/*genetics/metabolism, Carbon-Carbon Lyases/*genetics/metabolism, Cicer/*microbiology/physiology, *Evolution, Molecular, Mesorhizobium/classification/*enzymology/genetics/physiology, Molecular Sequence Data, Phylogeny, *Plant Root Nodulation, Portugal, SymbiosisMetabolism
Phylogeny25498849Diverse novel mesorhizobia nodulate New Zealand native Sophora species.Tan HW, Heenan PB, De Meyer SE, Willems A, Andrews MSyst Appl Microbiol10.1016/j.syapm.2014.11.0032014Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, *Genetic Variation, Glutamate-Ammonia Ligase/genetics, Humans, Mesorhizobium/*classification/genetics/*isolation & purification, Molecular Sequence Data, New Zealand, Phylogeny, *Plant Root Nodulation, Plant Roots/*microbiology/physiology, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sophora/*microbiology/physiologyPathogenicity
Phylogeny26296780Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules.De Meyer SE, Wee Tan H, Heenan PB, Andrews M, Willems AInt J Syst Evol Microbiol10.1099/ijsem.0.0004302015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Mesorhizobium/*classification/genetics/isolation & purification, Molecular Sequence Data, New Zealand, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Sophora/*microbiologyGenetics
Phylogeny32564274Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea.Jung YJ, Kim HJ, Hur MAntonie Van Leeuwenhoek10.1007/s10482-020-01435-02020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, High-Throughput Nucleotide Sequencing, Mesorhizobium/*classification/isolation & purification/*physiology, Molecular Typing, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64569Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106840Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106840)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
110844Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID92537.1
118276Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104229Collection of Institut Pasteur (CIP 104229)