Strain identifier
BacDive ID: 157996
Type strain: 
Species: Mesorhizobium ciceri
Strain Designation: UPM-Ca7
Strain history: IAM 15103 <-- LMG 14989 <-- S. M. Nour <-- T. Ruiz-Argueso UPM-Ca7.
NCBI tax ID(s): 39645 (species)
version 8 (current version)
General
@ref: 64569
BacDive-ID: 157996
DSM-Number: 106840
keywords: 16S sequence, Bacteria, mesophilic
description: Mesorhizobium ciceri UPM-Ca7 is a mesophilic bacterium of the family Phyllobacteriaceae.
NCBI tax id
- NCBI tax id: 39645
- Matching level: species
strain history
| @ref | history |
|---|---|
| 64569 | <- LMG; LMG 14989 <- S. Nour, Université Claude Bernard, Lyon, France <- T. Ruiz-Argieso, Universidad Politechnica Madrid, Spain |
| 67770 | IAM 15103 <-- LMG 14989 <-- S. M. Nour <-- T. Ruiz-Argueso UPM-Ca7. |
doi: 10.13145/bacdive157996.20230509.8
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium ciceri
- full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997
synonyms
- @ref: 20215
- synonym: Rhizobium ciceri
@ref: 64569
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium ciceri
full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997
strain designation: UPM-Ca7
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64569
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 64569 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | host species |
|---|---|---|---|---|---|
| 64569 | Spain | ESP | Europe | ||
| 67770 | Nodules of Cicer arietinum L | Cicer arietinum |
taxonmaps
- @ref: 69479
- File name: preview.99_809.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: AB681164
- Sequence Identity:
- Total samples: 30688
- soil counts: 18576
- aquatic counts: 5652
- animal counts: 4689
- plant counts: 1771
Safety information
risk assessment
- @ref: 64569
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Mesorhizobium ciceri gene for 16S rRNA, partial sequence, strain: NBRC 100389
- accession: AB681164
- length: 1410
- database: ena
- NCBI tax ID: 39645
External links
@ref: 64569
culture collection no.: DSM 106840, LMG 14989, ATCC 51585, CIP 104229, JCM 21564, NBRC 100389, ATCC 700744, DSM 11540, HAMBI 1750, IAM 15103, LMG 17150
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 7520739 | Rhizobium ciceri sp. nov., consisting of strains that nodulate chickpeas (Cicer arietinum L.). | Nour SM, Fernandez MP, Normand P, Cleyet-Marel JC | Int J Syst Bacteriol | 10.1099/00207713-44-3-511 | 1994 | Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fabaceae/*microbiology, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, *Plants, Medicinal, Polymorphism, Restriction Fragment Length, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/metabolism, Sequence Homology, Nucleic Acid, Species Specificity | Genetics |
| Phylogeny | 7547282 | Genomic heterogeneity of strains nodulating chickpeas (Cicer arietinum L.) and description of Rhizobium mediterraneum sp. nov. | Nour SM, Cleyet-Marel JC, Normand P, Fernandez MP | Int J Syst Bacteriol | 10.1099/00207713-45-4-640 | 1995 | Base Sequence, DNA, Bacterial/analysis, DNA, Ribosomal/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peas/*microbiology, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics | Genetics |
| Phylogeny | 12545212 | Lipopolysaccharides from Mesorhizobium huakuii and Mesorhizobium ciceri: chemical and immunological comparative data. | Choma A | Acta Biochim Pol | 0249041043 | 2002 | Alphaproteobacteria/*chemistry/*classification/immunology, Animals, Blotting, Western, Electrophoresis, Polyacrylamide Gel, Immune Sera/immunology, Lipopolysaccharides/*chemistry/*immunology, Rabbits, Species Specificity | Enzymology |
| Metabolism | 12633685 | The polar lipid composition of Mesorhizobium ciceri. | Choma A, Komaniecka I | Biochim Biophys Acta | 10.1016/s1388-1981(03)00005-2 | 2003 | Chromatography, Thin Layer, Fatty Acids/analysis, Lipids/analysis/*chemistry, Mass Spectrometry, Phospholipids/chemistry, Rhizobium/*chemistry/metabolism | |
| Phylogeny | 17473255 | Mesorhizobium ciceri biovar biserrulae, a novel biovar nodulating the pasture legume Biserrula pelecinus L. | Nandasena KG, O'Hara GW, Tiwari RP, Willlems A, Howieson JG | Int J Syst Evol Microbiol | 10.1099/ijs.0.64891-0 | 2007 | Acyltransferases/genetics, Alphaproteobacteria/*classification/genetics/physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Drug Resistance, Bacterial, Fabaceae/*microbiology/physiology, Fatty Acids/analysis, Genes, rRNA, Genomic Islands/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, Phylogeny, Plasmids/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Symbiosis/genetics | Genetics |
| Phylogeny | 19643905 | Mesorhizobium shangrilense sp. nov., isolated from root nodules of Caragana species. | Lu YL, Chen WF, Wang ET, Han LL, Zhang XX, Chen WX, Han SZ | Int J Syst Evol Microbiol | 10.1099/ijs.0.007393-0 | 2009 | Alphaproteobacteria/*classification/genetics/*isolation & purification, Caragana/*microbiology, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology | Genetics |
| Phylogeny | 22846039 | ACC deaminase genes are conserved among Mesorhizobium species able to nodulate the same host plant. | Nascimento FX, Brigido C, Glick BR, Oliveira S | FEMS Microbiol Lett | 10.1111/j.1574-6968.2012.02648.x | 2012 | Bacterial Proteins/*genetics/metabolism, Carbon-Carbon Lyases/*genetics/metabolism, Cicer/*microbiology/physiology, *Evolution, Molecular, Mesorhizobium/classification/*enzymology/genetics/physiology, Molecular Sequence Data, Phylogeny, *Plant Root Nodulation, Portugal, Symbiosis | Metabolism |
| Phylogeny | 25498849 | Diverse novel mesorhizobia nodulate New Zealand native Sophora species. | Tan HW, Heenan PB, De Meyer SE, Willems A, Andrews M | Syst Appl Microbiol | 10.1016/j.syapm.2014.11.003 | 2014 | Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, *Genetic Variation, Glutamate-Ammonia Ligase/genetics, Humans, Mesorhizobium/*classification/genetics/*isolation & purification, Molecular Sequence Data, New Zealand, Phylogeny, *Plant Root Nodulation, Plant Roots/*microbiology/physiology, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sophora/*microbiology/physiology | Pathogenicity |
| Phylogeny | 26296780 | Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules. | De Meyer SE, Wee Tan H, Heenan PB, Andrews M, Willems A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000430 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Mesorhizobium/*classification/genetics/isolation & purification, Molecular Sequence Data, New Zealand, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Sophora/*microbiology | Genetics |
| Phylogeny | 32564274 | Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea. | Jung YJ, Kim HJ, Hur M | Antonie Van Leeuwenhoek | 10.1007/s10482-020-01435-0 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, High-Throughput Nucleotide Sequencing, Mesorhizobium/*classification/isolation & purification/*physiology, Molecular Typing, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64569 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106840 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106840) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |