Strain identifier

BacDive ID: 157982

Type strain: No

Species: Arthrobacter woluwensis

Strain Designation: NM-35

Strain history: <- A. Stentebjerg, Aarhus University, Dept. og Microbiology <- S. Nazipi, National Botanical Research Institute; NM-35

NCBI tax ID(s): 156980 (species)

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General

@ref: 64555

BacDive-ID: 157982

DSM-Number: 109188

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Arthrobacter woluwensis NM-35 is a mesophilic bacterium that was isolated from nest material of social spider species Spegodyphus dumicola.

NCBI tax id

  • NCBI tax id: 156980
  • Matching level: species

strain history

  • @ref: 64555
  • history: <- A. Stentebjerg, Aarhus University, Dept. og Microbiology <- S. Nazipi, National Botanical Research Institute; NM-35

doi: 10.13145/bacdive157982.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter woluwensis
  • full scientific name: Arthrobacter woluwensis Funke et al. 1997

@ref: 64555

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter woluwensis

full scientific name: Arthrobacter woluwensis Funke et al. 1997

strain designation: NM-35

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64555COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64555TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 64555
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
64555-+++-++++-+---------+

Isolation, sampling and environmental information

isolation

  • @ref: 64555
  • sample type: nest material of social spider species Spegodyphus dumicola
  • geographic location: Tsumeb
  • country: Namibia
  • origin.country: NAM
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Animal habitation (Nest,Burrow)
#Host#Arthropoda

Safety information

risk assessment

  • @ref: 64555
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64555
  • description: Arthrobacter woluwensis strain NM-35, whole genome shotgun sequencing project
  • accession: PVZO00000000
  • length: 31
  • database: ena
  • NCBI tax ID: 156980

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter woluwensis NM-35GCA_003024475scaffoldncbi156980
66792Arthrobacter woluwensis NM-352857329121draftimg156980

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno96.961no
gram-positiveyes92.791no
anaerobicno99.496no
halophileno87.461no
spore-formingno91.072no
glucose-utilyes88.448no
aerobicyes94.489no
motileno91.904no
glucose-fermentno89.861yes
thermophileno98.707yes

External links

@ref: 64555

culture collection no.: DSM 109188

straininfo link

  • @ref: 110830
  • straininfo: 396869

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64555Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-109188Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109188)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68379Automatically annotated from API Coryne
110830Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396869.1