Strain identifier
BacDive ID: 157969
Type strain: 
Species: Amycolatopsis sp.
Strain Designation: C69
Strain history: <- R. Brown, Univ. Newcastle; C69 <- C. K. Okoro
NCBI tax ID(s): 37632 (species)
version 8.1 (current version)
General
@ref: 64541
BacDive-ID: 157969
DSM-Number: 45311
keywords: 16S sequence, Bacteria, mesophilic
description: Amycolatopsis sp. C69 is a mesophilic bacterium that was isolated from hyper-arid soil sample.
NCBI tax id
- NCBI tax id: 37632
- Matching level: species
strain history
- @ref: 64541
- history: <- R. Brown, Univ. Newcastle; C69 <- C. K. Okoro
doi: 10.13145/bacdive157969.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Amycolatopsis
- species: Amycolatopsis sp.
- full scientific name: Amycolatopsis Lechevalier et al. 1986
synonyms
- @ref: 20215
- synonym: Yuhushiella
@ref: 64541
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Amycolatopsis
species: Amycolatopsis sp.
full scientific name: Amycolatopsis sp.
strain designation: C69
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 64541 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 64541 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
- @ref: 64541
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64541
- sample type: hyper-arid soil sample
- geographic location: Salar de Atacama, Atacama Desert
- country: Chile
- origin.country: CHL
- continent: Middle and South America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Climate | #Hot | #Arid |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_1640.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_935;97_1087;98_1297;99_1640&stattab=map
- Last taxonomy: Amycolatopsis
- 16S sequence: EU551679
- Sequence Identity:
- Total samples: 520
- soil counts: 204
- aquatic counts: 52
- animal counts: 228
- plant counts: 36
Sequence information
16S sequences
- @ref: 64541
- description: Amycolatopsis sp. C69 16S ribosomal RNA gene, partial sequence
- accession: EU551679
- length: 1417
- database: ena
- NCBI tax ID: 531937
External links
@ref: 64541
culture collection no.: DSM 45311, NRRL B-24718
straininfo link
- @ref: 110818
- straininfo: 401715
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64541 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45311 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45311) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 110818 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401715.1 |