Strain identifier

BacDive ID: 157961

Type strain: No

Species: Actinomyces sp.

Strain Designation: AM4

Strain history: <- S. Palakawong Na Ayudthaya, TISTR, Wageningen University; AM4

NCBI tax ID(s): 29317 (species)

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General

@ref: 64533

BacDive-ID: 157961

DSM-Number: 100376

keywords: 16S sequence, Bacteria, mesophilic

description: Actinomyces sp. AM4 is a mesophilic bacterium that was isolated from cow, rumen fluid.

NCBI tax id

  • NCBI tax id: 29317
  • Matching level: species

strain history

  • @ref: 64533
  • history: <- S. Palakawong Na Ayudthaya, TISTR, Wageningen University; AM4

doi: 10.13145/bacdive157961.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces sp.
  • full scientific name: Actinomyces Harz 1877 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Odontomyces
    20215Actinobacterium

@ref: 64533

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces sp.

full scientific name: Actinomyces sp.

strain designation: AM4

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64533
  • name: BBL ACTINOMYCES BROTH (DSMZ Medium 1029)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1029
  • composition: Name: BBL ACTINOMYCES BROTH (DSMZ Medium 1029) Composition: Infusion Broth 1.425 g/l Potassium Phosphate 0.855 g/l Dextrose 0.285 g/l Yeast extract 0.285 g/l Pancreatic digest of casein 0.228 g/l L-Cysteine HCl 0.057 g/l Starch 0.057 g/l Ammonium Sulfate 0.057 g/l Magnesium sulfate 0.0114 g/l Calcium Chloride 0.00057 g/l Distilled water

culture temp

  • @ref: 64533
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380beta-glucosidase+3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
64533---+-+/-++/---++--+--++-++-+-----

Isolation, sampling and environmental information

isolation

  • @ref: 64533
  • sample type: cow, rumen fluid
  • geographic location: Wageningen
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids#Rumen fluid

taxonmaps

  • @ref: 69479
  • File name: preview.99_942.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_124;96_553;97_639;98_738;99_942&stattab=map
  • Last taxonomy: Actinomyces glycerinitolerans subclade
  • 16S sequence: LN680002
  • Sequence Identity:
  • Total samples: 1872
  • soil counts: 78
  • aquatic counts: 104
  • animal counts: 1666
  • plant counts: 24

Sequence information

16S sequences

  • @ref: 64533
  • description: Actinomyces sp. AM4 partial 16S rRNA gene, strain Am4
  • accession: LN680002
  • length: 1429
  • database: ena
  • NCBI tax ID: 1522002

External links

@ref: 64533

culture collection no.: DSM 100376, TISTR 2317

straininfo link

  • @ref: 110810
  • straininfo: 406990

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64533Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100376Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100376)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
110810Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406990.1