Strain identifier

BacDive ID: 157940

Type strain: No

Species: Klebsiella pneumoniae

Strain Designation: Kp-Goe-152021, Kp_Goe_152021

Strain history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-152021

NCBI tax ID(s): 573 (species)

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General

@ref: 64512

BacDive-ID: 157940

DSM-Number: 103710

keywords: genome sequence, Bacteria, Gram-negative, antibiotic resistance, human pathogen

description: Klebsiella pneumoniae Kp-Goe-152021 is a Gram-negative human pathogen that has multiple antibiotic resistances and was isolated from clinical material, abdomial drainage.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

strain history

  • @ref: 64512
  • history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-152021

doi: 10.13145/bacdive157940.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 64512

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887

strain designation: Kp-Goe-152021, Kp_Goe_152021

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64512COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64512NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 64512
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

antibiogram

  • @ref: 64512
  • medium: Mueller-Hinton Agar
  • incubation temperature: 30
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 0
  • cefalotin: 0
  • cefazolin: 0
  • cefotaxime: 0
  • aztreonam: 0
  • imipenem: 14
  • tetracycline: 0
  • chloramphenicol: 0
  • gentamycin: 14
  • amikacin: 10
  • vancomycin: 0
  • erythromycin: 12
  • lincomycin: 0
  • ofloxacin: 0
  • norfloxacin: 0
  • colistin: 16
  • pipemidic acid: 0
  • nitrofurantoin: 0
  • bacitracin: 0
  • polymyxin b: 18
  • kanamycin: 0
  • neomycin: 16
  • doxycycline: 10
  • ceftriaxone: 0
  • clindamycin: 0
  • fosfomycin: 18
  • moxifloxacin: 0
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 0

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 90.454

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
64512--+-+----+-+++++++++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 64512
  • sample type: clinical material, abdomial drainage
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Abdomen
#Host Body Product#Fluids
#Infection#Patient

Safety information

risk assessment

  • @ref: 64512
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae Kp_Goe_152021GCA_001908675completencbi573
66792Klebsiella pneumoniae strain Kp_Goe_152021573.16066plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_152021573.16064plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_152021573.16080plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_152021573.16069plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_152021573.16065plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_152021573.7355completepatric573
66792Klebsiella pneumoniae Kp_Goe_1520212718218006completeimg573

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno100no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.361no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no58.101no
69480spore-formingspore-formingAbility to form endo- or exosporesno90.454no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno76.6no

External links

@ref: 64512

culture collection no.: DSM 103710

straininfo link

  • @ref: 110791
  • straininfo: 405002

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64512Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103710Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103710)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
110791Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405002.1