Strain identifier
BacDive ID: 157925
Type strain: 
Species: Arcobacter skirrowii
Strain Designation: FLI 17-1206-2
Strain history: <- I. Hänel, Friedrich-Loeffler-Institut, Jena, Germany; FLI 17-1206-2
NCBI tax ID(s): 28200 (species)
General
@ref: 64497
BacDive-ID: 157925
DSM-Number: 107964
keywords: Bacteria, mesophilic, human pathogen
description: Arcobacter skirrowii FLI 17-1206-2 is a mesophilic human pathogen that was isolated from faeces from peking duck.
NCBI tax id
- NCBI tax id: 28200
- Matching level: species
strain history
- @ref: 64497
- history: <- I. Hänel, Friedrich-Loeffler-Institut, Jena, Germany; FLI 17-1206-2
doi: 10.13145/bacdive157925.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Arcobacteraceae
- genus: Arcobacter
- species: Arcobacter skirrowii
- full scientific name: Arcobacter skirrowii Vandamme et al. 1992
synonyms
- @ref: 20215
- synonym: Aliarcobacter skirrowii
@ref: 64497
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Arcobacteraceae
genus: Arcobacter
species: Arcobacter skirrowii
full scientific name: Arcobacter skirrowii Vandamme et al. 1992
strain designation: FLI 17-1206-2
type strain: no
Culture and growth conditions
culture medium
- @ref: 64497
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
- @ref: 64497
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68373 | 16199 | urea | - | hydrolysis |
| 68373 | 17632 | nitrate | + | reduction |
| 68373 | 606565 | hippurate | - | hydrolysis |
| 68373 | 78019 | triphenyltetrazolium chloride | - | reduction |
| 68373 | 17634 | D-glucose | - | assimilation |
| 68373 | 30031 | succinate | - | assimilation |
| 68373 | 30089 | acetate | + | assimilation |
| 68373 | 17272 | propionate | + | assimilation |
| 68373 | 25115 | malate | - | assimilation |
| 68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
| @ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. |
|---|---|---|---|---|---|
| 68373 | 48923 | erythromycin | yes | yes | 14 µg |
| 68373 | 474053 | cefazolin | yes | yes | 224 µg |
| 68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
metabolite production
- @ref: 68373
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68373 | catalase | + | 1.11.1.6 |
| 68373 | alkaline phosphatase | + | 3.1.3.1 |
| 68373 | L-aspartate arylamidase | - | 3.4.11.21 |
| 68373 | L-arginine arylamidase | - | |
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68373 | gamma-glutamyltransferase | - | 2.3.2.2 |
| 68373 | esterase | - | |
| 68373 | urease | - | 3.5.1.5 |
API CAM
| @ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64497 | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | + | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 64497
- sample type: faeces from peking duck
- geographic location: Thuringia
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.9272
- longitude: 11.5861
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Birds |
Safety information
risk assessment
- @ref: 64497
- pathogenicity human: yes, in single cases
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 64497
culture collection no.: DSM 107964
straininfo link
- @ref: 110776
- straininfo: 401306
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64497 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107964 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107964) | |
| 68373 | Automatically annotated from API CAM | |||
| 110776 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401306.1 |