Archive BacDiveID:10.13145/bacdive157914.20230509.8.1

Strain identifier

BacDive ID: 157914

Type strain:

Species: Desulfosporomusa polytropa

Strain Designation: STP3

Strain history: T. Itoh; RIKEN BRC-JCM, Japan <-- JCM <-- H. Sass; Univ. of Oldenburg, Germany; STP3.

NCBI tax ID(s): 78126 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 64487

BacDive-ID: 157914

DSM-Number: 12907

keywords: 16S sequence, Bacteria, mesophilic

description: Desulfosporomusa polytropa STP3 is a mesophilic bacterium that was isolated from profundal lake sediments.

NCBI tax id

NCBI tax id: 78126
Matching level: species

strain history

@ref	history
64487	<- T. Itoh, JCM; JCM 32836 <- Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH <- H. Sass, Univ. Oldenburg, Germany; STP3 (Sporomusa desulfuricans) <- H. Sass {1994}
67770	T. Itoh; RIKEN BRC-JCM, Japan <-- JCM <-- H. Sass; Univ. of Oldenburg, Germany; STP3.

doi: 10.13145/bacdive157914.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacillota, not assigned to class
order: Bacillota, not assigned to order
family: Bacillota, not assigned to family
genus: Desulfosporomusa
species: Desulfosporomusa polytropa
full scientific name: Desulfosporomusa polytropa Sass et al. 2004

@ref: 64487

domain: Bacteria

phylum: Firmicutes

class: Firmicutes, not assigned to class

order: Firmicutes, not assigned to order

family: Firmicutes, not assigned to family

genus: Desulfosporomusa

species: Desulfosporomusa polytropa

full scientific name: Desulfosporomusa polytropa Sass et al. 2004

strain designation: STP3

type strain: no

Culture and growth conditions

culture medium

@ref: 64487
name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
growth: yes
link: https://mediadive.dsmz.de/medium/194
composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na-(DL)-lactate 2.49252 g/l Na2CO3 1.49551 g/l Yeast extract 0.997009 g/l NaCl 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
64487	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
64487	profundal lake sediments	Mecklenburg, Lake Stechlin	Germany	DEU	Europe
67770	Sediment from the oligotrophic Lake Stechlin	North of Berlin	Germany	DEU	Europe

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

Sequence information

16S sequences

@ref: 64487
description: Desulfosporomusa polytropa partial 16S rRNA gene, strain STP3
accession: AJ006605
length: 1444
database: ena
NCBI tax ID: 78126

GC content

@ref: 67770
GC-content: 46.2
method: high performance liquid chromatography (HPLC)

External links

@ref: 64487

culture collection no.: DSM 12907, JCM 32836, JCM 12564

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
64487	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-12907	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12907)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/