Strain identifier

BacDive ID: 157901

Type strain: No

Species: Vibrio sp.

Strain Designation: P101TypB

Strain history: <- H. Cypionka, Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg; P101TypB

NCBI tax ID(s): 678 (species)

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General

@ref: 64474

BacDive-ID: 157901

DSM-Number: 108853

keywords: Bacteria, mesophilic

description: Vibrio sp. P101TypB is a mesophilic bacterium that was isolated from sediment.

NCBI tax id

  • NCBI tax id: 678
  • Matching level: species

strain history

  • @ref: 64474
  • history: <- H. Cypionka, Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg; P101TypB

doi: 10.13145/bacdive157901.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio sp.
  • full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Beneckea
    20215Allomonas
    20215Lucibacterium

@ref: 64474

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio sp.

full scientific name: Vibrio sp.

strain designation: P101TypB

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64474
  • name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514f
  • composition: Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 64474
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
64474+-+-----+-+++-+-+++-++-

Isolation, sampling and environmental information

isolation

  • @ref: 64474
  • sample type: sediment
  • geographic location: Peruvian Exclusive Economic Zone (9° 06.78' S, 80° 35.01' W)
  • country: Peru
  • origin.country: PER
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Sediment

External links

@ref: 64474

culture collection no.: DSM 108853

straininfo link

  • @ref: 110754
  • straininfo: 403637

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64474Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108853Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108853)
68368Automatically annotated from API 20E
110754Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403637.1