Strain identifier
BacDive ID: 157786
Type strain: 
Species: Micromonospora sp.
Strain Designation: S4605
Strain history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; S4605 <- A. Veyisoglu, Ondokuz Mayis University, Samsun, Turkey; S4605
NCBI tax ID(s): 1876 (species)
version 8.1 (current version)
General
@ref: 64358
BacDive-ID: 157786
DSM-Number: 45925
keywords: genome sequence, Bacteria, spore-forming, mesophilic
description: Micromonospora sp. S4605 is a spore-forming, mesophilic bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1876
- Matching level: species
strain history
- @ref: 64358
- history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; S4605 <- A. Veyisoglu, Ondokuz Mayis University, Samsun, Turkey; S4605
doi: 10.13145/bacdive157786.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora sp.
- full scientific name: Micromonospora Ørskov 1923 (Approved Lists 1980)
synonyms
@ref synonym 20215 Verrucosispora 20215 Xiangella 20215 Jishengella
@ref: 64358
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora sp.
full scientific name: Micromonospora sp.
strain designation: S4605
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.129 | |
| 69480 | 100 | positive |
multimedia
- @ref: 64358
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45925.jpg
- caption: Medium 553 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 64358 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 64358 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 64358 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
culture temp
- @ref: 64358
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 100 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 64358
- sample type: marine sediment
- geographic location: Samsun, Black Sea
- country: Turkey
- origin.country: TUR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Micromonospora sp. S4605 | 1420897.3 | wgs | patric | 1420897 |
| 66792 | Micromonospora sp. S4605 | 2921629928 | draft | img | 1420897 |
| 66792 | Micromonospora sp. S4605 | GCA_003176715 | contig | ncbi | 1420897 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 93.603 | no |
| gram-positive | yes | 90.111 | no |
| anaerobic | no | 99.382 | no |
| halophile | no | 94.144 | no |
| spore-forming | yes | 92.293 | no |
| thermophile | no | 98.811 | yes |
| glucose-util | yes | 88.43 | no |
| aerobic | yes | 95.443 | no |
| flagellated | no | 97.642 | no |
| glucose-ferment | no | 91.988 | no |
External links
@ref: 64358
culture collection no.: DSM 45925
straininfo link
- @ref: 110641
- straininfo: 396919
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64358 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45925 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45925) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 110641 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396919.1 |