Strain identifier

BacDive ID: 157750

Type strain: Yes

Species: Macrococcus epidermidis

Strain Designation: NRL/St 01/688

Strain history: <- I. Sedlácek; CCM 7099 <- M. Eliasova

NCBI tax ID(s): 1902580 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 8.1 (current version)

General

@ref: 64319

BacDive-ID: 157750

DSM-Number: 103681

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Macrococcus epidermidis NRL/St 01/688 is a mesophilic, Gram-positive bacterium that was isolated from skin smear.

NCBI tax id

  • NCBI tax id: 1902580
  • Matching level: species

strain history

  • @ref: 64319
  • history: <- I. Sedlácek; CCM 7099 <- M. Eliasova

doi: 10.13145/bacdive157750.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Macrococcus
  • species: Macrococcus epidermidis
  • full scientific name: Macrococcus epidermidis Mašla?ová et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Macrococcoides epidermidis

@ref: 64319

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Clostridiales

family: Staphylococcaceae

genus: Macrococcus

species: Macrococcus epidermidis

full scientific name: Macrococcus epidermidis Mašla?ová et al. 2018

strain designation: NRL/St 01/688

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 64319
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 64319
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.595

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose-fermentation
6837516024D-mannose-fermentation
6837517306maltose-fermentation
6837517716lactose-fermentation
6837527082trehalose-fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose-fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
64319-----+/---------++--+-------

Isolation, sampling and environmental information

isolation

  • @ref: 64319
  • sample type: skin smear
  • geographic location: Ceske Budejovice
  • country: Czech Republic
  • origin.country: CZE
  • continent: Europe

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Organ
  • Cat3: #Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_2313.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1248;97_1481;98_1805;99_2313&stattab=map
  • Last taxonomy: Macrococcus
  • 16S sequence: MH044691
  • Sequence Identity:
  • Total samples: 10750
  • soil counts: 1069
  • aquatic counts: 930
  • animal counts: 8379
  • plant counts: 372

Sequence information

16S sequences

  • @ref: 64319
  • description: Macrococcus epidermidis strain CCM 7099 16S ribosomal RNA gene, partial sequence
  • accession: MH044691
  • length: 1560
  • database: ena
  • NCBI tax ID: 1902580

Genome sequences

  • @ref: 66792
  • description: Macrococcus epidermidis strain 01/688
  • accession: 1902580.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 1902580

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes89no
motileno89.302no
gram-positiveyes95.249no
anaerobicno97.767no
aerobicyes83.683no
halophileyes91.949no
spore-formingno81.496no
glucose-utilyes86.98no
flagellatedno93.104no
thermophileno99.799no
glucose-fermentno72.791yes

External links

@ref: 64319

culture collection no.: DSM 103681, CCM 7099

literature

  • topic: Genetics
  • Pubmed-ID: 29951040
  • title: Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virulence Potential and Suspected Uptake of Foreign DNA by Natural Transformation.
  • authors: Maslanova I, Wertheimer Z, Sedlacek I, Svec P, Indrakova A, Kovarovic V, Schumann P, Sproer C, Kralova S, Sedo O, Kristofova L, Vrbovska V, Fuzik T, Petras P, Zdrahal Z, Ruzickova V, Doskar J, Pantucek R
  • journal: Front Microbiol
  • DOI: 10.3389/fmicb.2018.01178
  • year: 2018
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64319Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103681Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103681)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes