Strain identifier

BacDive ID: 157675

Type strain: No

Species: Clostridium symbiosum

Strain Designation: LT0011

Strain history: <- B. Hanson, University of Vienna, Department of Microbiology and Ecosystem Science, Division of Microbial Ecology; LT0011 <-

NCBI tax ID(s): 1512 (species)

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General

@ref: 64244

BacDive-ID: 157675

DSM-Number: 108250

keywords: Bacteria

description: Clostridium symbiosum LT0011 is a bacterium that was isolated from fecal materials collected from healthy vegetarian humans.

NCBI tax id

  • NCBI tax id: 1512
  • Matching level: species

strain history

  • @ref: 64244
  • history: <- B. Hanson, University of Vienna, Department of Microbiology and Ecosystem Science, Division of Microbial Ecology; LT0011 <-

doi: 10.13145/bacdive157675.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium symbiosum
  • full scientific name: Clostridium symbiosum (Stevens 1956) Kaneuchi et al. 1976 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides symbiosus

@ref: 64244

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Anaeroplasmatales

family: Clostridiaceae

genus: Clostridium

species: Clostridium symbiosum

full scientific name: Clostridium symbiosum (Stevens 1956) Kaneuchi et al. 1976

strain designation: LT0011

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64244FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
64244FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://mediadive.dsmz.de/medium/1203aName: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

culture temp

  • @ref: 64244
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
64244---+-------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 64244
  • sample type: fecal materials collected from healthy vegetarian humans
  • geographic location: Vienna
  • country: Austria
  • origin.country: AUT
  • continent: Europe
  • latitude: 48.2083
  • longitude: 16.3719

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

Safety information

risk assessment

  • @ref: 64244
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 64244

culture collection no.: DSM 108250

straininfo link

  • @ref: 110544
  • straininfo: 401109

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64244Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108250Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108250)
68380Automatically annotated from API rID32A
110544Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401109.1