Strain identifier
BacDive ID: 157229
Type strain: 
Species: Bifidobacterium anseris
Strain history: LMG 30189 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Goo31D.
NCBI tax ID(s): 2020963 (species)
version 8.1 (current version)
General
@ref: 63769
BacDive-ID: 157229
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium anseris CCUG 70960 is an anaerobe, mesophilic bacterium that was isolated from Faeces,Anser domesticus.
NCBI tax id
- NCBI tax id: 2020963
- Matching level: species
strain history
- @ref: 67770
- history: LMG 30189 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Goo31D.
doi: 10.13145/bacdive157229.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium anseris
- full scientific name: Bifidobacterium anseris Lugli et al. 2018
@ref: 63769
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium anseris
type strain: yes
Morphology
colony morphology
- @ref: 63769
- incubation period: 2 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63769 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63769
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|---|
| 63769 | Faeces,Anser domesticus | 2013-05-03 | Emilia Romagna,Parma | Italy | ITA | Europe | |
| 67770 | Stool sample of a domestic goose (Anser domesticus) | Italy | ITA | Europe | Anser domesticus |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Birds | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 67770
- description: Bifidobacterium anseris Goo31D
- accession: GCA_002860345
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2020963
GC content
- @ref: 67770
- GC-content: 64.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.243 | no |
| gram-positive | yes | 91.402 | no |
| anaerobic | yes | 97.811 | yes |
| halophile | no | 77.703 | no |
| spore-forming | no | 95.342 | no |
| thermophile | no | 97.242 | no |
| glucose-util | yes | 85.424 | no |
| aerobic | no | 96.291 | yes |
| motile | no | 94.349 | no |
| glucose-ferment | yes | 78.555 | no |
External links
@ref: 63769
culture collection no.: CCUG 70960, LMG 30189, JCM 32705
straininfo link
- @ref: 110328
- straininfo: 410764
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 29395537 | Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov. | Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M | Syst Appl Microbiol | 10.1016/j.syapm.2018.01.002 | 2018 | Animals, Bacterial Typing Techniques, Base Sequence, Bifidobacterium/*classification/genetics, Callithrix/microbiology, Cricetinae/microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Geese/microbiology, High-Throughput Nucleotide Sequencing, Italy, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rabbits/microbiology, Saguinus/microbiology, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 32804603 | Bifidobacterium canis sp. nov., a novel member of the Bifidobacterium pseudolongum phylogenetic group isolated from faeces of a dog (Canis lupus f. familiaris). | Neuzil-Bunesova V, Lugli GA, Modrackova N, Makovska M, Mrazek J, Mekadim C, Musilova S, Svobodova I, Spanek R, Ventura M, Killer J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004378 | 2020 | Aldehyde-Lyases, Animals, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification, DNA, Bacterial/genetics, Dogs/*microbiology, Feces/microbiology, Genes, Bacterial, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63769 | Curators of the CCUG | https://www.ccug.se/strain?id=70960 | Culture Collection University of Gothenburg (CCUG) (CCUG 70960) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 110328 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410764.1 |