Strain identifier
BacDive ID: 157213
Type strain: 
Species: Methylobacillus caricis
Strain history: N. V. Doronina; G. K. Skryabin Inst. of Biochem. & Physiol. of Microorg., RAS, Russia; OV.
NCBI tax ID(s): 1971611 (species)
version 8.1 (current version)
General
@ref: 63739
BacDive-ID: 157213
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Methylobacillus caricis CCUG 70601 is an aerobe, mesophilic bacterium that was isolated from Rhizosphere of sedge.
NCBI tax id
- NCBI tax id: 1971611
- Matching level: species
strain history
- @ref: 67770
- history: N. V. Doronina; G. K. Skryabin Inst. of Biochem. & Physiol. of Microorg., RAS, Russia; OV.
doi: 10.13145/bacdive157213.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Methylophilaceae
- genus: Methylobacillus
- species: Methylobacillus caricis
- full scientific name: Methylobacillus caricis Agafonova et al. 2020
@ref: 63739
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Nitrosomonadales
family: Methylophilaceae
genus: Methylobacillus
species: Methylobacillus caricis
type strain: yes
Morphology
colony morphology
- @ref: 63739
- incubation period: 1 day
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63739 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63739
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|---|
| 63739 | Rhizosphere of sedge(Carex sp) | 2013 | Moscow region,Pushchino | Russia | RUS | Europe | |
| 67770 | Root of the sedge (Carex sp.) in the vicinity of the town of Pushchino | Moscow region | Russia | RUS | Carex sp. |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_3987.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_174;96_1029;97_2441;98_3019;99_3987&stattab=map
- Last taxonomy: Methylobacillus
- 16S sequence: KY806199
- Sequence Identity:
- Total samples: 5097
- soil counts: 589
- aquatic counts: 1076
- animal counts: 2643
- plant counts: 789
Sequence information
16S sequences
- @ref: 67770
- description: Methylobacillus sp. OV 16S ribosomal RNA gene, partial sequence
- accession: KY806199
- length: 1413
- database: ena
- NCBI tax ID: 1971611
External links
@ref: 63739
culture collection no.: CCUG 70601, JCM 32031, VKM B-3158
straininfo link
- @ref: 110312
- straininfo: 410946
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63739 | Curators of the CCUG | https://www.ccug.se/strain?id=70601 | Culture Collection University of Gothenburg (CCUG) (CCUG 70601) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 110312 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410946.1 |