Strain identifier
BacDive ID: 15708
Type strain: 
Species: Streptomyces sp.
Strain Designation: Beijerinck
Strain history: KCC A-0014 <-- K. Tubaki <-- M. W. Beijerinck.
NCBI tax ID(s): 1931 (species)
General
@ref: 9666
BacDive-ID: 15708
DSM-Number: 40589
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces sp. Beijerinck is a mesophilic bacterium of the family Streptomycetaceae.
NCBI tax id
- NCBI tax id: 1931
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9666 | <- E.B. Shirling, ISP (Streptomyces oligocarbophilus) <- CBS, Beijerinck |
| 67770 | KCC A-0014 <-- K. Tubaki <-- M. W. Beijerinck. |
doi: 10.13145/bacdive15708.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces sp.
- full scientific name: Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)
synonyms
@ref synonym 20215 Microechinospora 20215 Carbonactinospora 20215 Actinosporangium 20215 Actinopycnidium 20215 Elytrosporangium 20215 Streptoverticillium 20215 Chainia 20215 Indiella 20215 Actinacidiphila 20215 Kitasatoa 20215 Microellobosporia
@ref: 9666
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces sp.
full scientific name: Streptomyces sp.
strain designation: Beijerinck
type strain: no
Culture and growth conditions
culture medium
- @ref: 9666
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9666 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_135.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184432
- Sequence Identity:
- Total samples: 4030
- soil counts: 2441
- aquatic counts: 286
- animal counts: 1009
- plant counts: 294
Sequence information
16S sequences
- @ref: 20218
- description: Streptomyces sp. gene for 16S rRNA, partial sequence, strain: NBRC 13478
- accession: AB184432
- length: 1458
- database: ena
- NCBI tax ID: 1931
Genome sequences
- @ref: 67770
- description: Streptomyces alboviridis NRRL B-1579
- accession: GCA_000716935
- assembly level: contig
- database: ncbi
- NCBI tax ID: 67269
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.921 | no |
| flagellated | no | 97.488 | no |
| gram-positive | yes | 88.568 | no |
| anaerobic | no | 98.933 | no |
| halophile | no | 93.656 | no |
| spore-forming | yes | 94.042 | no |
| thermophile | no | 99.179 | yes |
| glucose-util | yes | 87.926 | no |
| aerobic | yes | 93.275 | no |
| glucose-ferment | no | 86.637 | no |
External links
@ref: 9666
culture collection no.: DSM 40589, ATCC 27453, CBS 101.18, CBS 779.72, IFO 13478, ISP 5589, NBRC 13478, RIA 1439, JCM 3014, JCM 4804, NCIMB 12970, NRRL B-12520, NRRL B-1579, VKM Ac-673
straininfo link
- @ref: 84794
- straininfo: 45809
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9666 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40589) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40589 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84794 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45809.1 | StrainInfo: A central database for resolving microbial strain identifiers |