Strain identifier

BacDive ID: 156938

Type strain: Yes

Species: Streptococcus caprae

NCBI tax ID(s): 1640501 (species)

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General

@ref: 63392

BacDive-ID: 156938

keywords: 16S sequence, Bacteria, microaerophile, Gram-positive, coccus-shaped, colony-forming

description: Streptococcus caprae CECT 8872 is a microaerophile, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from Iberian Ibex,tonsill sample.

NCBI tax id

  • NCBI tax id: 1640501
  • Matching level: species

doi: 10.13145/bacdive156938.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus caprae
  • full scientific name: Streptococcus caprae Vela et al. 2016

@ref: 63392

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus caprae

type strain: yes

Morphology

cell morphology

  • @ref: 65211
  • gram stain: positive
  • cell length: 0.5-1 µm
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 65211
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • colony size: 0.75-1.0 mm
  • colony color: non-pigmented
  • colony shape: circular
  • medium used: blood agar

Culture and growth conditions

culture medium

  • @ref: 65211
  • name: blood agar
  • growth: yes

culture temp

@refgrowthtypetemperature
63392positivegrowth37
65211positivegrowth22
65211positivegrowth30
65211positivegrowth37
65211positivegrowth42
65211nogrowth15

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
63392microaerophile
65211facultative anaerobe

spore formation

  • @ref: 65211
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65211NaClpositivegrowth3.5 %(w/v)
65211NaClpositivegrowth4.5 %(w/v)
65211NaClpositivegrowth6.5 %(w/v)

observation

@refobservation
65211Cells occurring in pairs or chains commonly over more than eight cells long
65211Does not react with Lance?eld group A, B, C, D, F and G antisera

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
65211168082-dehydro-D-gluconate-builds acid from
65211581435-dehydro-D-gluconate-builds acid from
6521127613amygdalin+builds acid from
6521118305arbutin+builds acid from
6521129016arginine-hydrolysis
6521117057cellobiose+builds acid from
6521123456cyclodextrin-builds acid from
6521115963ribitol-builds acid from
6521117108D-arabinose-builds acid from
6521118333D-arabitol-builds acid from
6521115824D-fructose+builds acid from
6521128847D-fucose-builds acid from
6521112936D-galactose+builds acid from
6521117634D-glucose+builds acid from
6521162318D-lyxose-builds acid from
6521116899D-mannitol-builds acid from
6521116024D-mannose+builds acid from
6521116988D-ribose+builds acid from
6521117924D-sorbitol-builds acid from
6521165327D-xylose-builds acid from
6521116813galactitol-builds acid from
6521117113erythritol-builds acid from
652114853esculin+builds acid from
6521128066gentiobiose-builds acid from
6521117754glycerol-builds acid from
6521128087glycogen-builds acid from
65211606565hippurate-hydrolysis
6521117268myo-inositol-builds acid from
6521115443inulin+builds acid from
6521130849L-arabinose-builds acid from
6521118403L-arabitol-builds acid from
6521118287L-fucose-builds acid from
6521162345L-rhamnose+builds acid from
6521117266L-sorbose-builds acid from
6521165328L-xylose-builds acid from
6521117716lactose+builds acid from
6521117306maltose+builds acid from
652116731melezitose+builds acid from
6521128053melibiose+builds acid from
65211320061methyl alpha-D-glucopyranoside+builds acid from
6521143943methyl alpha-D-mannoside-builds acid from
65211320055methyl beta-D-glucopyranoside-builds acid from
6521174863methyl beta-D-xylopyranoside-builds acid from
65211506227N-acetylglucosamine+builds acid from
6521127941pullulan-builds acid from
6521117814salicin+builds acid from
6521128017starch-builds acid from
6521117992sucrose+builds acid from
6521133954tagatose-builds acid from
6521127082trehalose+builds acid from
6521132528turanose-builds acid from
6521116199urea-hydrolysis
6521117151xylitol-builds acid from

metabolite production

  • @ref: 65211
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

enzymes

@refvalueactivityec
65211catalase-1.11.1.6
65211esterase (C 4)+
65211esterase Lipase (C 8)+
65211leucine arylamidase+3.4.11.1
65211acid phosphatase+3.1.3.2
65211beta-glucosidase+3.2.1.21
65211glycyl tryptophan arylamidase+
65211tripeptide aminopeptidase+3.4.11.4
65211lipase (C 14)-
65211cystine arylamidase-3.4.11.3
65211trypsin-3.4.21.4
65211alpha-chymotrypsin-3.4.21.1
65211alpha-galactosidase-3.2.1.22
65211pyroglutamic acid arylamidase-
65211beta-mannosidase-3.2.1.25
65211N-acetyl-beta-glucosaminidase-3.2.1.52
65211alpha-mannosidase-3.2.1.24
65211alpha-fucosidase-3.2.1.51
65211valine arylamidase-
65211naphthol-AS-BI-phosphohydrolase-
65211beta-galactosidase-3.2.1.23
65211alpha-glucosidase-3.2.1.20

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
63392Iberian Ibex,tonsill sample2007-08-18BarcelonaSpainESPEurope
65211tonsil of a spanish ibexNational Game Reserve of Puertos de Tortosa-BeceiteSpainESPEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Oral cavity and airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_151813.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_57566;97_74465;98_100290;99_151813&stattab=map
  • Last taxonomy: Streptococcus caprae subclade
  • 16S sequence: LN833583
  • Sequence Identity:
  • Total samples: 1830
  • soil counts: 35
  • aquatic counts: 26
  • animal counts: 1760
  • plant counts: 9

Sequence information

16S sequences

  • @ref: 65211
  • description: Streptococcus caprae partial 16S rRNA gene, type strain DICM07-02790-1CT
  • accession: LN833583
  • database: nuccore

External links

@ref: 63392

culture collection no.: CECT 8872, CCUG 67170

straininfo link

  • @ref: 110094
  • straininfo: 409059

literature

  • topic: Phylogeny
  • Pubmed-ID: 26486442
  • title: Streptococcus caprae sp. nov., isolated from Iberian ibex (Capra pyrenaica hispanica).
  • authors: Vela AI, Mentaberre G, Lavin S, Dominguez L, Fernandez-Garayzabal JF
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000697
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Goats/*microbiology, Molecular Sequence Data, Palatine Tonsil/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Streptococcus/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
63392Curators of the CCUGhttps://www.ccug.se/strain?id=67170Culture Collection University of Gothenburg (CCUG) (CCUG 67170)
65211A. I. Vela, G. Mentaberre, S. Lavín, L. Domínguez, J. F. Fernández-GarayzábalStreptococcus caprae sp. nov., isolated from Iberian ibex (Capra pyrenaica hispanica)10.1099/ijsem.0.000697IJSEM 66: 196-200 201626486442
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
110094Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID409059.1