Strain identifier
BacDive ID: 156909
Type strain: 
Species: Scandinavium goeteborgense
NCBI tax ID(s): 1972222 (species)
version 8.1 (current version)
General
@ref: 63359
BacDive-ID: 156909
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile
description: Scandinavium goeteborgense CCUG 66741 is an aerobe, mesophilic, motile bacterium that was isolated from Human wound,38-yr-old Female.
NCBI tax id
- NCBI tax id: 1972222
- Matching level: species
doi: 10.13145/bacdive156909.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Scandinavium
- species: Scandinavium goeteborgense
- full scientific name: Scandinavium goeteborgense Marathe et al. 2020
@ref: 63359
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Buttiauxella
species: Buttiauxella sp.
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.117 | |
| 69480 | 99.973 | negative |
Culture and growth conditions
culture temp
- @ref: 63359
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63359
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.928 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 63359
- sample type: Human wound,38-yr-old Female
- sampling date: 2014-12-20
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Female |
| #Host Body-Site | #Other | #Wound |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Scandinavium goeteborgense CCUG 66741 | GCA_003935895 | complete | ncbi | 1851514 |
| 66792 | Enterobacteriaceae bacterium CCUG 66741 | 1851514.3 | wgs | patric | 1851514 |
| 66792 | Scandinavium goeteborgense CCUG 66741 | 2883423733 | complete | img | 1851514 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.454 | no |
| motile | yes | 89.454 | no |
| flagellated | no | 61.607 | no |
| flagellated | no | 61.607 | no |
| gram-positive | no | 97.635 | no |
| gram-positive | no | 97.635 | no |
| anaerobic | no | 97.979 | yes |
| anaerobic | no | 97.979 | yes |
| aerobic | yes | 84.682 | yes |
| aerobic | yes | 84.682 | yes |
| halophile | no | 87.373 | no |
| halophile | no | 87.373 | no |
| spore-forming | no | 93.194 | no |
| spore-forming | no | 93.194 | no |
| glucose-util | yes | 95.203 | no |
| glucose-util | yes | 95.203 | no |
| thermophile | no | 99.324 | no |
| thermophile | no | 99.324 | no |
| glucose-ferment | yes | 93.23 | no |
| glucose-ferment | yes | 93.23 | no |
External links
@ref: 63359
culture collection no.: CCUG 66741
literature
- topic: Phylogeny
- Pubmed-ID: 31781055
- title: Scandinavium goeteborgense gen. nov., sp. nov., a New Member of the Family Enterobacteriaceae Isolated From a Wound Infection, Carries a Novel Quinolone Resistance Gene Variant.
- authors: Marathe NP, Salva-Serra F, Karlsson R, Larsson DGJ, Moore ERB, Svensson-Stadler L, Jakobsson HE
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2019.02511
- year: 2019
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63359 | Curators of the CCUG | https://www.ccug.se/strain?id=66741 | Culture Collection University of Gothenburg (CCUG) (CCUG 66741) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |