Strain identifier
version 9.1 (current version)
General
@ref: 63333
BacDive-ID: 156895
keywords: genome sequence, Bacteria, microaerophile, Gram-negative
description: Arcobacter faecis CCUG 66484 is a microaerophile, Gram-negative bacterium that was isolated from Human septic tank.
NCBI tax id
- NCBI tax id: 1564138
- Matching level: species
doi: 10.13145/bacdive156895.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Arcobacteraceae
- genus: Arcobacter
- species: Arcobacter faecis
- full scientific name: Arcobacter faecis Whiteduck-Léveillée et al. 2019
synonyms
- @ref: 20215
- synonym: Aliarcobacter faecis
@ref: 63333
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Arcobacter
species: Arcobacter faecis
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.31
colony morphology
- @ref: 63333
- incubation period: 2 days
Culture and growth conditions
culture temp
- @ref: 63333
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 63333
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 94.439 |
| 69481 | no | 98 |
Isolation, sampling and environmental information
isolation
- @ref: 63333
- sample type: Human septic tank
- sampling date: 2009-11-24
- geographic location: Ontario,Ottawa
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Human |
| #Infection | #Inflammation |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aliarcobacter faecis CCUG 66484 | GCA_013201705 | complete | ncbi | 1564138 |
| 66792 | Aliiarcobacter faecis strain CCUG 66484 | 1564138.11 | complete | patric | 1564138 |
| 66792 | Aliarcobacter faecis LMG 28519 | GCA_024584135 | contig | ncbi | 1564138 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 98 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.31 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 69.156 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 78.396 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 94.439 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 86.909 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 67.352 | no |
External links
@ref: 63333
culture collection no.: CCUG 66484, LMG 28519
straininfo link
- @ref: 110055
- straininfo: 396427
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26723853 | Identification, characterization and description of Arcobacter faecis sp. nov., isolated from a human waste septic tank. | Whiteduck-Leveillee K, Whiteduck-Leveillee J, Cloutier M, Tambong JT, Xu R, Topp E, Arts MT, Chao J, Adam Z, Levesque CA, Lapen DR, Villemur R, Khan IU | Syst Appl Microbiol | 10.1016/j.syapm.2015.12.002 | 2015 | Arcobacter/*classification/isolation & purification/ultrastructure, *Bacterial Typing Techniques, Fatty Acids/chemistry, Feces/microbiology, Genes, Bacterial, Genome, Bacterial, Humans, Sequence Analysis, DNA | Genetics |
| Phylogeny | 34797211 | Arcobacter vandammei sp. nov., isolated from the rectal mucus of a healthy pig. | Kerkhof PJ, On SLW, Houf K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005113 | 2021 | Animals, *Arcobacter/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Mucus/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rectum/*microbiology, Sequence Analysis, DNA, Sus scrofa/*microbiology, Swine | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63333 | Curators of the CCUG | https://www.ccug.se/strain?id=66484 | Culture Collection University of Gothenburg (CCUG) (CCUG 66484) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 110055 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396427.1 |